Pantoea agglomerans C410P1: BEE12_03025
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Entry
BEE12_03025 CDS
T04739
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BEE12_03025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagc03400
]
BEE12_03025
Enzymes [BR:
pagc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BEE12_03025
DNA repair and recombination proteins [BR:
pagc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BEE12_03025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DUF4378
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AOE38927
LinkDB
All DBs
Position
complement(698725..702264)
Genome browser
AA seq
1179 aa
AA seq
DB search
MTQLPPVSLNPLTLPLKGERLIEASAGTGKTFTIGLLYLRLLLGLGGENAYSRPLSVEEI
LVVTFTEAATAELRGRIRENIHQLRLACIRGKSSNPMHQLLLEQMPDLSQAAAQLLAAER
QMDEAAIFTIHGFCQRMLNLNAFESGMLFEQELIEDEQALLKQSAADFWRRQCYPLSLDV
ARIIAAEWSGPDSLLATLRPWLQGESPGLKRPPAADETLASRHARNLARIEAIKQQWQAL
SADVEGIITASGVDKRSYSSKHLPNWVARVTQWASSDTLDYQLPKELERFGQQVLEEKTK
KGEAPRHSLFEAIDQFLAEPLSLRDVIIAQALTDVRATVQREKRLRALLGFDDLLSKLDE
ALQQPGGVLLAETIRARYPVALIDEFQDTDPQQYRIFRTLYINQPEQALFLIGDPKQAIY
AFRGADIFTYLRARNEVSAHYTLDTNWRSSPEMVGSVNRLFSQLDSPFLFSAIPFQPVKP
AAPNQSLKLIFDEQQQPALRFWLQPGEGVGNSDYQQFMAQQCAADISRWLVAGQQGRARL
GKGEVLQPVRASDITVLVRSRNEAGLIRDALNALSIPSVYLSSRDSVYTTPEARELLWLL
QAIQAPEQERLLRSALATSIFAIDAATLDALTQNEREWDALVEQFAVWQQLWHQRGVLPM
LRDVMIKRQLAENMLASENGERRLTDLMHLGELLQEASVQLESPHALVRFLAQQIARPNS
QASSQQLRLESDRHLVQIITIHKSKGLQYPLVWLPFAAGFREAASALYHDRDTFTALLDV
QGDAQSLALAEEERLAEDLRLLYVALTRSVYHCSVGIAPLIKGTRKKEGESDLHKSALGY
LVQQGEAADAQQLSQRLNALTGEGIALVEEGLLPGEMWQDAQLGDEVLSSRDITRALADV
WRVTSYSGLQQHHSSPLLDALPNFDIDAAGEEEKGEEAALTPHHFPRGAAPGTFLHGLFE
SIDFTEPPDSVWLEDQLQHNGYPLSWLPVLEQWIDRVLHTPLNAEGLTLSAIKSSERLIE
MEFYLPINNLLTAADLDALLRRHDSLSQQAAPLDFRQVRGMLKGFIDLVFRWQGKYYLLD
YKSNWLGDSHAAYTPEAMAQAMIGHRYDLQYQLYTLALHRYLQHRLPDYDYQRHFGGVFY
LFLRGMDGSSPDNGIFTTRPAEAFVEEIDALFGETGEML
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagttacctcccgtatcgctgaatcctttaacgctgccgctcaaaggtgagcgg
ctgattgaggcgtcagcgggcacaggaaaaacctttaccattggtctgctctatctgcgc
ctgctgctggggctgggcggtgaaaacgcctacagccggccgctctctgtcgaagaaatt
ttagtcgtgacctttaccgaggccgcgaccgccgaattgcgcgggcgcatccgcgagaat
attcatcagctacgtctggcctgtatccgtggcaaaagcagcaatccgatgcaccagtta
ctgctggagcagatgccggatctgagtcaggccgccgcgcagttgctggctgccgagcgg
cagatggatgaagccgccattttcaccattcacggcttctgtcagcggatgctgaatctc
aatgcctttgagtcgggcatgctgttcgagcaggagttgattgaagatgagcaggcgctg
ctgaagcagtcggccgccgatttctggcgtcgtcagtgctatccactgagtctggatgtg
gcgcggatcatcgccgcagagtggagcgggccggacagtctgctggccacgctgcgcccc
tggctacagggggagtcgccggggctgaaacgtccgcctgcagccgatgagacgctggca
tcacggcacgcccgcaatctggcgcgtatcgaggccatcaagcagcagtggcaggcgctc
agcgccgatgttgagggcattatcactgcatcgggcgttgataagcgcagctacagcagt
aaacatctgcccaactgggtcgcccgcgtcacgcagtgggccagcagcgacacgctggat
tatcagttgcccaaagagctggagcgctttggacagcaggtgctggaggagaaaactaaa
aagggtgaagcgccgcgtcattcgctgtttgaggcgatcgatcagtttctggcagaaccg
ctgtcgctgcgggatgtcatcattgcgcaggcgctgaccgatgtgcgcgccacggtgcag
cgcgagaaacgcttacgtgcgctgttaggcttcgacgatctgctcagtaaactggatgaa
gcgttgcagcagccaggcggcgttttgctggcagaaaccatccgggcgcgttacccggtg
gccctgattgatgaattccaggataccgatccgcagcagtaccgcatcttccgcaccctc
tatattaatcagcctgaacaggcactgtttctgatcggcgatcccaagcaggcgatctat
gcgtttcgcggtgcggatatttttacctatctgcgggccagaaacgaagtcagcgctcac
tacacgctcgataccaactggcgttcatcacctgagatggtcgggagcgtcaaccgcctc
ttttctcagctcgattcgccttttctgttctcggcgatcccctttcagccggttaagcct
gctgcgcccaatcagtcactgaaactgatttttgacgagcagcagcaaccggcgttacgg
ttctggctgcagcctggcgagggcgtcggtaacagcgattaccagcagtttatggcacag
cagtgtgcggccgatatcagccgctggctggtggccggacagcaggggagggcccgcctg
ggcaaaggcgaggtgctgcagccggtgcgggcttccgatatcaccgtgctggtgcgcagt
cgcaatgaggccggtttaatccgtgacgcgctgaatgcgctgtcgattccttcggtctat
ctctccagccgggacagtgtctacaccacgccggaagcgcgcgaactgctctggttactg
caggcgatacaggcacctgagcaggaacgtctgctgcgcagcgcgctggcgacctcaatc
tttgctattgatgcagcaacgctcgacgcgctgacacagaatgaacgcgagtgggatgcg
ctggttgagcagtttgccgtctggcagcagctctggcatcagcgcggcgtgttaccgatg
ctgcgtgatgtgatgatcaagcggcaactggcagagaatatgctggcctcggagaacggt
gaacgtcgcctgaccgatctgatgcatctgggcgaactgctgcaggaagcttcggtgcag
ctggaaagtccgcacgccctggtgcgcttcctggcgcagcagatagcccggccaaacagc
caggcctccagccagcagttgcgtctggaaagcgaccgccatctggtgcagatcatcacc
atccataaatcgaaaggactgcaatatccgctggtctggctgccatttgctgccgggttc
cgcgaggcggccagcgcgctttatcacgatcgcgacacgttcacggcactgctggatgtg
cagggtgatgcacaaagtctggcgctggccgaagaggagcgcctggcggaggatctgcgt
ctgctctacgtggcgctgacccgttcggtctatcactgcagcgtcggcattgcgccactg
atcaaaggcacccgcaaaaaagagggcgaaagcgatctgcataagagcgcgctgggctac
ctggtgcagcagggcgaggcggcggatgcgcaacagctcagtcagcgactgaatgcgtta
accggtgaagggattgcgctggttgaagaggggctgctgccgggagaaatgtggcaggat
gcgcagctgggtgatgaggttttaagcagccgcgacattacgcgcgcgcttgctgacgtc
tggcgggtaaccagttattcaggcctgcaacagcatcacagctcgccgctgctggatgcg
ctgcccaactttgatattgatgccgcgggcgaagaagagaagggtgaagaggctgcattg
acaccccaccactttccgcgcggagcggcacccggtacgtttttgcacggtctgtttgag
tcgatcgactttaccgaaccgccggacagcgtctggctggaagatcagctgcagcataat
ggctatccgctgagctggttgccggttctggaacagtggattgaccgggtcttacatacg
ccgctcaatgctgaggggctgacgctgtcggcgataaaaagcagcgaacgcctgatcgag
atggagttctatctgccaatcaacaatctgctgaccgcggcggatcttgacgctctgctg
cgccggcacgacagcctctctcagcaggccgcccccctggattttcgtcaggtgcggggc
atgctgaagggctttatcgatctggtcttccgctggcagggaaaatattatctgctcgac
tacaaatcgaactggctgggggatagccacgccgcttacacgccagaggcgatggcgcag
gcgatgattggccaccgctacgatttgcaatatcagctctatacgctggcgctgcatcgc
tatctgcagcatcgtttgccggactacgactatcagcgtcattttggtggggtgttttat
ctgtttttgcgcgggatggatggcagctcgccggacaacggcattttcaccacccgacct
gccgaagcctttgtggaagaaattgatgcactgtttggtgaaaccggggagatgttatga
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