Pantoea agglomerans C410P1: BEE12_04420
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Entry
BEE12_04420 CDS
T04739
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEE12_04420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagc03019
]
BEE12_04420
03016 Transfer RNA biogenesis [BR:
pagc03016
]
BEE12_04420
Enzymes [BR:
pagc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BEE12_04420
Messenger RNA biogenesis [BR:
pagc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BEE12_04420
Transfer RNA biogenesis [BR:
pagc03016
]
Prokaryotic type
tRNA degradation factors
BEE12_04420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
HTH_20
LexA_DNA_bind
YqfQ
Motif
Other DBs
NCBI-ProteinID:
AOE39178
UniProt:
A0AAJ5SEI7
LinkDB
All DBs
Position
complement(1007644..1010136)
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AA seq
830 aa
AA seq
DB search
MSKDPFQDREAEKYENPIPSREFILALLEKREKPASREELAEEMNLQEEEHLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDLYLSAEQMKFCMH
GDVILAQPLGADRKGRREARVVRVQEPRNNQIVGRYFTDAGAGFVVPDDSRLSFDILIPP
EETMNARMGSVVVVELVQRPNRRSKAIGKIAEILGDDMGTSLAVDMALRTHEIPHTWPPE
VEAQVSKLKEEVPEEAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAHQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGKLTGFKHYEAVMNSHARLTYNKVWNILQGDKELRQQYAPLVKDLEELNNLYHALEAA
REERGGISFETEEAKFIFNAERRIERVERVSRNDAHKLIEECMILANIASARFVEKNQEP
ALFRDHDRPTDESIKSFRTVLNELGLSLPGGNKPQPIDYAALLKQVADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLTLHRAIKYLLAKEQDEGKGLVQRA
IKYLMPRDRSVAKDMTTATGGYHYDMPQMLQLGLHCSLTERRADEATRDVADWLKCDFMQ
DQVGNVFNGVISSVTGFGFFVRLSDLFIDGLVHVSTLDNDYYRFDPVGQRLIGESGGRTY
RLGDTVEVRVEAVHMDERKIDFALISSQRQVRGEGKTARDRAKRDDKAPAKRRRDASKKS
NFEPDAAFRGDKGKPAAANTENKSKNVSEKTRKIAAATRAKRARKKAQPD
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggatagagaagctgaaaaatacgaaaatcctattccgagc
cgtgaatttattctggctctgttagaaaaacgtgaaaaaccggccagccgtgaagagctg
gctgaagagatgaatctgcaggaagaagaacaccttgaggcgctgcgtcgccgccttcgc
gccatggagcgtgatggtcagctggtgttcacccgccgtcagtgttatgccctgcctgaa
cgtcttgatctcctgcgcggtaaagtcattggccaccgagacggctacggcttcctgcgg
gcagaaggtcagaaagatgacctctacctttccgcagaacagatgaaattctgtatgcac
ggtgacgtaatcctggcgcagccgctgggtgccgatcgcaaaggccgccgcgaagcgcgc
gtggtccgggtgcaggaaccccgcaacaatcagatcgttggccgttactttaccgatgcc
ggtgccggcttcgtggtgccggacgatagtcgcctgagttttgacatcctcatcccgcct
gaagagacgatgaatgcccgcatgggttccgtggtggtggttgagctggtccagcgtccg
aaccgtcgcagcaaagcgatcggtaaaatcgccgagattctgggcgatgatatgggcacc
agcctggccgtggatatggcgctgcgtacgcatgaaatcccgcacacctggccgccggaa
gtggaagctcaggtcagtaaactgaaagaagaagtcccggaagaggccaaaaaaggccgc
gtcgatctgcgtaagctgccgctggtcaccatcgatggtgaagatgcccgtgactttgat
gatgctgtttactgtgagaagaagcgcggtggcggatggcgcctgtgggtggctatcgcg
gatgtcagctattacgtccgtcctggcactccactggatgacgaagcgcatcagcgcgga
acctcggtctacttcccgtcgcaggttgtgccgatgctgccggaagtgctgtcgaatggc
ttatgttcgcttaacccacaggtcgatcgcctctgtatggtgtgcgagatgaccatctcg
accaaaggtaaactgaccggcttcaagcactacgaagcggtgatgaactcccatgcgcgt
ctgacctacaacaaagtctggaacatcctgcagggcgacaaagagctgcgtcagcagtat
gcgccgctggttaaagaccttgaagagctgaacaacctctatcatgcgctggaagccgct
cgtgaagagcgcggcggtatctcgtttgaaacggaagaggcgaagtttatcttcaacgcc
gagcgccgtattgagcgtgttgagcgagtgtcacgtaatgacgctcataagctgatcgaa
gagtgcatgatccttgctaacatcgcctcggcacgcttcgttgagaaaaatcaggaaccg
gcgctgttccgcgatcacgatcgcccgactgacgaaagcatcaagagcttccgtaccgtg
ctcaacgagctgggactgagtctgcctggcggcaacaaaccgcagccaatcgactatgcg
gcgctgctgaagcaggttgccgatcgtcctgatgcggaaatgctgcaaaccatgctgctg
cgttcgatgaagcaggccgtttacgacccggaaaaccgtggtcactttggtctggcactc
tcgtcgtatgcgcactttacctcgccaatccgtcgttacccggatctgacgctgcatcgc
gccatcaaatatctgctggcaaaagagcaggatgaaggtaaaggcctggtacagcgcgct
attaaatacctgatgccgagagatcgcagcgtcgccaaagatatgacgacagcaaccggt
ggctatcactacgacatgccgcagatgctgcaactgggcctgcactgttctctgaccgaa
cgccgcgccgatgaagcgacccgtgacgtcgcggactggctcaagtgtgacttcatgcag
gatcaggttggcaacgtcttcaacggcgtcatctccagcgtgaccggatttggcttcttt
gtacgcttaagcgatctgttcattgatggcctggtccacgtttcgacactcgacaacgat
tactaccgttttgacccggtaggtcagcgtctgatcggtgaatcgggcggtcgcacctat
cgtctgggtgacacggttgaagtgcgtgttgaagccgtccatatggatgagcgtaaaatc
gactttgccctgatctccagccagcgtcaggtacgtggtgaaggcaaaaccgcacgtgac
cgggcgaagcgtgacgacaaagcgccagcgaaacgccgtcgtgatgcgagcaagaagtcc
aacttcgagccggacgccgctttccggggcgacaagggtaagcccgccgctgcaaatacc
gagaataaaagtaaaaacgtctcggaaaaaacccgtaaaatcgccgccgccacccgggcg
aagcgcgccagaaaaaaggcgcagcctgactga
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