Pantoea agglomerans C410P1: BEE12_07425
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Entry
BEE12_07425 CDS
T04739
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEE12_07425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagc03021
]
BEE12_07425
03019 Messenger RNA biogenesis [BR:
pagc03019
]
BEE12_07425
Transcription machinery [BR:
pagc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BEE12_07425
Messenger RNA biogenesis [BR:
pagc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BEE12_07425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
S1CSD-TOTE-2
AAA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AOE39703
UniProt:
A0A379AMI7
LinkDB
All DBs
Position
1649105..1650364
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVAELVTLGENMGLENQARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANKRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSLAHNYPDCTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTSQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggttgctgagctggttactctcggcgaaaat
atgggactggaaaaccaggctcgtatgcgcaagcaggacattatcttttcaatcctgaag
cagcacgcgaaaagcggcgaagacatcttcggtgatggcgtgctggagatccttcaggat
ggatttggattcctccgttccggagacagctcctacctcgccggccctgatgatatctac
gtttcccctagtcaaatccgccgcttcaacctccgcactggtgacaccatctctggcaaa
atccgtccaccgaaagagggtgaacgttattttgcgctgctgaaagttaacgaagttaac
tacgacaagccggaaaatgcgcgtaataagattctgttcgaaaacctcacgccgctgcac
gcaaataaacgtctgcgtatggagcggggtaatggctcaacggaagatttaaccgctcgc
gtactggatctggcatcgccaattggtcgtggccagcgtggtctgattgttgcaccaccg
aaagccggtaaaaccatgctgctgcagaacatcgcgcagagcctggcgcacaactatccg
gactgtaccctgatggtactgctgatcgatgagcgcccggaagaagtaaccgagatgcag
cgtctggtgaaaggcgaagttatcgcctcaaccttcgatgagccagcttcacgccacgtt
caggttgctgaaatggtgatcgagaaggccaagcgtctggttgaacacaagaaagatgtc
atcatcctgctcgactccattacacgtctggcgcgtgcctacaacaccgtggttcctgct
tcaggtaaagtcctgaccggtggtgtggatgccaacgccctgcatcgtccaaagcgtttc
tttggtgctgcacgtaacgtggaagagggcggcagcctgaccatcatcgcgactgcgctg
gttgataccggttcgaagatggatgaagtgatttacgaagagtttaaaggtaccggtaac
atggaactgcatctcgcccgtaaaatcgctgaaaaacgcgtcttccctgctattgattac
aatcgctctggtacgcgtaaagaagagctgctcacctctcaggaagagctgcagaagatg
tggatcctgcgtaagattattcacccgatgggcgaaatcgacgcaatggaattcctcatc
aacaagctggcgatgaccaaaactaatgatgaattcttcgatatgatgaagcgttcttaa
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