Pantoea agglomerans C410P1: BEE12_09335
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Entry
BEE12_09335 CDS
T04739
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEE12_09335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagc03019
]
BEE12_09335
03009 Ribosome biogenesis [BR:
pagc03009
]
BEE12_09335
Enzymes [BR:
pagc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BEE12_09335
Messenger RNA biogenesis [BR:
pagc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BEE12_09335
Ribosome biogenesis [BR:
pagc03009
]
Prokaryotic type
rRNA helicases
BEE12_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOE40036
UniProt:
A0A6B3IU22
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All DBs
Position
2057090..2059030
Genome browser
AA seq
646 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAD
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATMEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDQYRALLAKMQPEEEMDLETL
AAALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARGDSRAPRENRESRDGD
RPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELP
KGMPGDVLQHFTRTRILNKPMNMQLLGDAQPNEGRGDRRPAGAGGERRSGPGAGGPGAAN
REGGRRFSSERREGGREGGGRTFNREGSRGPRREEGAAAAPRRRDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgaccttggcctgaacgccgacatccttgaatca
ctgaatggcatgggctacgtaaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtgttaggcatggcgcagaccgggagtggtaaaaccgcggcgttc
tctctgccgctgttacacaacattgatcctactgttaaagcgccacaaatcctggtgctg
gcacctacccgcgaactggcggtacaggttgctgaagcagttaccgaattctctaaacac
atgcgtggcctgaacgtggttgccctttacggcggccagcgttatgacgtgcagctgcgc
gcactgcgtcagggaccacaggttgttgtgggtacgcctggccgtctgcttgaccacctg
aaacgcggcacgttagacctttctaacctgcgtggcctggtgctggatgaagcagacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccatcatggcgcaaattccagccgat
catcagaccgcgctgttctctgcaaccatgcctgaagcgattcgtcgtatcaccaaacgc
ttcatgaaagatccacaggaagtgcgtattcagtcaagtctgaccacgcgtcctgatatc
agccagagctactggaccgcttacggtcgtaaaacagacgcactggttcgcttcctggaa
gcagaagactttgatgctgccatcatcttcgtgcgtaccaaaaacgcaaccatggaagtg
gcagaagcgctggaacgtagtggctataacagcgccgcgctgaacggtgacatgaaccag
gctctgcgtgagcagacgcttgagcgcctgaaagatggtcgtctcgacattctgattgca
accgacgttgcggctcgtggcctggacgttgagcgcatcagcctggttgttaactacgac
atcccgatggactcagaatcttacgttcaccgtatcggccgtaccggtcgtgctggccgt
gctggccgtgcgctgctgttcgttgagaaccgcgaacgccgtctgctgcgtaacatcgaa
cgtaccatgaagctgaccattcctgaggtagaactgcctaacgcagaactgctgggtgag
cgtcgtctggctaagtttgctgctaaagttcagcagcagctggaaagcagcgatctggat
cagtaccgcgctctgctggctaaaatgcagccagaagaagaaatggatctggaaacgctg
gcagcagcactgctgaagatggcacagggcgaacgtcctctgattctgccaccagaagca
ccgcgtccggcacgtcgcgaataccgcgatcgtgacgagcgtgatggccgtcgtgacagc
cgtgaagcacgtggcgattctcgtgctccgcgtgaaaaccgcgaaagccgtgatggcgat
cgtccacgtcgcgaacgtcgtgacgttggcgaaatgcagctgtaccgcatcgaagtaggc
cgcgatgatggtgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgacatc
agcagccgttacatcggtaacatcaagctgttcggtacccactcgactatcgagctgccg
aaaggcatgccaggcgatgtgctgcagcactttacccgtacccgtattctgaacaagccg
atgaatatgcagttactgggtgatgcacagccgaacgaaggccgtggtgatcgtcgtcca
gccggtgctggcggtgagcgtcgcagcggtccaggtgcaggcggtccgggcgcagctaac
cgtgaaggtggtcgtcgcttctcttctgaacgccgtgaaggtggtcgtgaaggcggcgga
cgtactttcaaccgtgaaggtagccgtggtccacgtcgtgaagagggcgcagccgccgct
ccacgtcgtcgtgatgcataa
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