Pantoea agglomerans C410P1: BEE12_12835
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Entry
BEE12_12835 CDS
T04739
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEE12_12835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagc03019
]
BEE12_12835
Enzymes [BR:
pagc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BEE12_12835
Messenger RNA biogenesis [BR:
pagc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BEE12_12835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOE40652
UniProt:
A0AAP1QC28
LinkDB
All DBs
Position
2805108..2806487
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AA seq
459 aa
AA seq
DB search
MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPML
QKLSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMV
KLRGGVDILVATPGRLLDLAQQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTASEQVAQQVAFVDKKRKRELLSQLI
GEGNWQQVLVFTRTKHGANHLAEQLGKDGISAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDI
ERLLKREIPRLAVEGYEPDPSIKAEPIINGRQQQSRGGAGGGGGGRGRSQGGQGAGASRS
SSSGEKRPQARRQSQAAPQGDRPAARPRRPAAAKRTGNV
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactctctcggcctgagtgccgatattttgcgcgcggtcgccgaacaaggc
tacagcgaacccacacctatccagcgccaggcgattcctgttgtgctggcaggccgcgat
ctgctggcgagcgcccagaccggcaccggcaaaacagccggctttaccttaccgatgtta
caaaaactctctgccactgccacgcccatccgcggtcgtcgcccggtgcgcgccctgatc
ctgaccccaacccgtgaactcgcggcgcaggtcggcgaaaacgtcagcgactacagcaaa
tatctctcgctgcgttccatggtggtgtttggtggcgtcagcatcaatccacagatggtc
aaactgcgtggcggcgtcgatatcctggtggcaacgcctggacgtctgctggatctggca
caacagaatgcagttgacctgtcacaggtcgaaattctggtgctggatgaagcggaccgt
atgctggatatgggctttatccacgacatccgtcgcgtactggcgcgtctgccggccaaa
cgtcagaacctgctgttctctgccaccttctctgatgagatcaaaggcctggctgagaaa
ctgctgaccaacccggaaatgatagaagtggctcgccgcaacaccgcctccgagcaggtt
gcgcagcaggtggctttcgttgataagaagcgtaagcgtgaattgttgtctcagctgatt
ggcgaaggcaactggcagcaggtgctggtcttcacccggaccaagcacggcgcgaaccac
cttgccgagcagctgggcaaagatggcatctccgccgccgcgatccacggcaacaaaagc
cagggagcacgtacccgcgcgctggccgacttcaaatcaggcggtatccgcgtcctggtt
gccaccgatatcgcggcccgtggcctggatatcgaagagctgccacacgtcgtgaactac
gagctgcctaacgtcgccgaagattacgttcaccgtattggccgtaccggccgtgcagct
gcgaccggtgtcgcactgtcgctggtttgcgtcgatgagcataaactgctgcgtgatatc
gaacgtctgctgaagcgtgaaatcccgcgtctggccgttgagggttatgaacccgatccg
agcatcaaagcggagccgatcatcaacggtcgtcagcagcagtctcgcggcggtgcaggt
ggcggtggcggcggccgtggtcgcagccagggcggacagggtgcaggcgcatcgcgctca
tcttcatccggcgaaaagcgtccccaggcgcgtcgtcagagccaggccgctcctcagggc
gataggcccgcagcccgtccgcgtcgtccggcagcagcgaagcgtaccggaaacgtctga
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