Pantoea agglomerans C410P1: BEE12_14185
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Entry
BEE12_14185 CDS
T04739
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEE12_14185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagc03019
]
BEE12_14185
03009 Ribosome biogenesis [BR:
pagc03009
]
BEE12_14185
Enzymes [BR:
pagc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BEE12_14185
Messenger RNA biogenesis [BR:
pagc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BEE12_14185
Ribosome biogenesis [BR:
pagc03009
]
Prokaryotic type
rRNA processing factors
BEE12_14185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
GvpH
Motif
Other DBs
NCBI-ProteinID:
AOE40899
LinkDB
All DBs
Position
complement(3102700..3106140)
Genome browser
AA seq
1146 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVNAIETRQGGVRAIIVPDDKMQ
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PVEVEPEAQRAEAQPAAKAAPAVAAPATVSTGFFGRLLGGLKKMFAGEEAPAAAPVATEV
AEPQKAPESEQENGNGRGERRSNNNNRRNNNRRERTPRNGDNAQSREGREPRENREPREN
REPRESREPRESREPRENREPREGNDNRRNKRQSQAGEVREERPALSEEARQQRDEQQQQ
RREQRAERQRRRQEEKRAGEEAAKVAEQPVVVADVPDVTEPQDDERVQVMPRRKPRQLNQ
KVRVDDNRPPMPAEASDFAQPAEVRQPQQTEVAQPQPEFQAPQGEEQDDNDNRDNANMPR
RSRRSPRHLRVSGQRRRRYRDERYPTQSAMPLAAAAASPEMASGKVWIRYPVSQASEEQV
QNVTHETPAYNREETADAASALPVAAAVESVAQEAPVQQAEPQAETPVPVVNTDDTRAID
APVDEQPSVVPAADEAKAEAVAAEAVPAEPVTEAPVVTPAVETAQPAAVAEEAQPVEVAE
QSATDVSEAIAAEVEEVLNAPVAAEAETAPVREPHAPVAARDVAPEAPVTAAEPVVSVPA
TASVPNDGTRWKHFASAPMTKAPAPVWQSEPAPHSDWVRAPYEFDGRGSAGGHSATHHAT
APATKP
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcagcaggaggagttgcgcgttgccctggttgac
ggtcagcgtctgtacgatctggatattgaaagtcctggacacgagcagaaaaaagccaac
atttacaaaggtaaaatcactcgcattgaacccagccttgaagctgcgtttgtcgattac
ggcgcagagcgtcacggtttcctcccgttaaaagaaatctcccgcgaatacttcccctcc
agctataacgcgcatggtcgtccgaatattaaagacgtgctgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagaacgtggcaataaaggcgctgcgctgaccacctttatc
tctctggcgggcagctatctggtactgatgccgaataacccacgtgcaggcggtatctct
cgccgcatcgaaggtgacgatcgtaccgaactgaaagaagccctgtcggcgctggaactg
ccggaaggcatgggcctgattgtccgtactgcaggcgtcggtaaatcagccgaatcgctg
cagtgggatttaagcttccgtctcaaacactgggaagcgatcaagaaagccgctgaaaac
cgccctgctccgttcctgatccatcaggaaagtaacgtgattgtgcgtgccttccgcgac
tatctgcgtcaggacatcggtgaaatccttatcgataacccgaaagtactggaactggcg
cgtcagcatatcgctgcgctgggccgtccggacttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccactatcagatcgaatcgcaaatcgaatccgctttccag
cgtgaagtccgcctgccttccggtggctcgattgtgatcgacagtaccgaagcgctgacc
gctatcgatatcaactcagcacgtgcgacgcgcggcggtgatatcgaagagacggcgttc
aacaccaaccttgaagcggccgatgagattgctcgtcagctgcgtctgcgtgacctgggc
ggcctgatcgttatcgattacatcgatatgacgccggtacgccatcagcgcgcggttgag
aatcgtctgcgtgaagctgtccgtcaggaccgcgcccgcattcagatcagccacatttca
cgtttcggcctgctggagatgtcccgtcagcgtctgagcccgtcattaggtgaatccagt
catcacgtctgcccacgctgtagcggcaccggcaccatccgtgataacgagtcactggcg
ctgtcgatcctgcgtctgattgaagaagaagcgctgaaagataacaccaaagaagttcac
gccattgttccggttcaggtggcctcttacctgctgaatgaaaaacgtgaagcggttaac
gctattgaaacacgccagggtggcgtgcgggctatcatcgttcctgacgacaagatgcag
accccacactactccgtgctgcgcgtgcgcaaaggcgaagagacgcagaccctgagctat
catctgccgaagctacatgaagccgaaatggcgatgccgtcggaagaggaacatgctgaa
cgtcgtcgtcctgagcagcctgctctggccgcgtttgtaatgcctgatgcgcctccggca
ccggtagaagttgagccagaagcgcaacgcgctgaagcccagccagccgcaaaagcagca
cctgctgtggctgcgcctgctaccgtcagcaccggcttctttggccgtctgcttggtggc
ctgaaaaaaatgttcgcaggcgaagaagcccctgccgccgcacccgtggccactgaggtt
gcagaaccgcagaaagcgcctgaaagcgagcaggaaaacggcaatggccgtggcgagcgc
cgcagcaataataacaaccgccgtaacaataatcgtcgtgagcgtacgccgcgtaacgga
gataacgcgcagtcgcgtgaaggccgtgaaccacgcgaaaaccgtgagcctcgtgaaaac
cgcgaacctcgtgaaagccgtgaaccgcgcgaaagtcgcgagccacgtgaaaatcgcgag
ccgcgcgagggtaacgataatcgccgtaacaagcgtcagtcccaggctggtgaagtgcgt
gaagagcgtccggcactgagcgaagaagcgcgccagcagcgtgatgagcagcagcaacag
cgccgtgaacagcgtgctgagcgtcagcgtcgtcgtcaggaagagaaacgcgccggtgaa
gaagctgccaaagtggctgagcagccagtagtggtagccgacgttccggacgtgaccgag
ccgcaggatgatgagcgcgtacaggttatgccgcgtcgtaagccgcgtcagctgaaccag
aaggtgcgtgttgatgataaccgtccacctatgccagccgaagccagcgactttgcccag
ccggctgaagtgcgtcagcctcagcagacagaggtggctcagccgcagcctgagttccag
gcaccccagggtgaagagcaggatgacaacgacaaccgtgataacgccaatatgccgcgt
cgttcacgtcgttcgcctcgtcatctgcgcgtcagcggacagcgtcgtcgtcgttaccgt
gatgagcgttatccgactcagtcagcaatgccgctggccgctgcagctgcatcaccagag
atggcatccggtaaagtctggatccgttacccggtgagccaggccagcgaagagcaggtt
cagaatgtgactcacgagacgccagcgtacaaccgcgaagagacagcagacgccgcgagt
gcgctgcctgttgctgccgctgttgaatctgttgctcaggaagcgccagtgcaacaggcc
gagccgcaggcagaaacgccagtgccggtcgtgaatactgacgatacccgtgctatcgac
gcgccggttgacgagcagccttccgttgttccggcggcagatgaagcaaaagcggaagcg
gtagcagccgaagccgtgcctgctgagcctgtcactgaagcgccggttgtgacaccagcg
gttgagactgcacagcctgcagcggttgcagaagaagcacagcctgtggaggttgctgag
caatcggctaccgacgtcagcgaagcgatcgcagcagaagttgaagaagttctgaatgcg
ccggtcgctgctgaagctgaaacagcgcctgttcgtgaacctcatgctccggtagccgca
cgcgatgtcgcccctgaagcaccggtgactgcggccgaacctgttgtatcagtgcctgca
acggcatccgtgccgaatgacggtacgcgctggaagcattttgcctctgcgccgatgact
aaagcgcctgcgccagtctggcagtcagaaccggcaccgcacagtgactgggtgcgtgca
ccgtatgagttcgacggtcgcggttctgcgggtggtcatagcgccacgcatcatgccact
gccccggcgaccaagccgtaa
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