Pantoea agglomerans C410P1: BEE12_17130
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Entry
BEE12_17130 CDS
T04739
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pagc
Pantoea agglomerans C410P1
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagc03019
]
BEE12_17130
Enzymes [BR:
pagc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BEE12_17130
Messenger RNA biogenesis [BR:
pagc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BEE12_17130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
PhoH
nSTAND3
T2SSE
NACHT
AAA_23
AAA_30
HA2_N
ResIII
AAA_25
SLFN-g3_helicase
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AOE41423
LinkDB
All DBs
Position
complement(3730030..3733932)
Genome browser
AA seq
1300 aa
AA seq
DB search
MSSPDTSPLAALWSRLNGVMLRDRQRLQRRLQGARKAKNPEAQQGIASELEQDFIAAEQR
VAQRRAATPAITFPDNLPVSQKQQDIAEAIRDHQVVIVAGETGSGKTTQLPKICLALGRG
VTGLIGHTQPRRLAARTVANRIADELSTSLGGCVGYKVRFNDQVSDLTQIKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FNNAPVIEVSGRTYPVEVRYRPVIEEADDGDRDQLQAIFDAVDELGRESRGDILIFMSGE
REIRDTADALNKRDLPHTEVLPLYARLSNAEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYAEDDFLSR
PAFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGALTLNEE
TGHYKLTGSGRQLAQLPVDPRLARMVLEAQKFGCVREVMIITAGLSIQDPRERPADKKQA
SDEKHRRFADKDSDFLAYVNLWNYLAEQQKALSGNVFRRQCKSDFLNYLRVREWQDIYTQ
LRQVVRELGIPVNSEPAELQPVHCALLSGLLSHIGQKDTDKQEYTGARNTRFAIFPGSGL
FKKPPKWTMVAELVETSRLWGRTAGRIEPEWIEPLAQHLIKRSYSEPHWEKSQGAVMASE
KVTLYGLPIVAARKVNYGSIDPTLSRELFIRHALVEGDWQTRHAFFRANQKLRSEVEDLE
HKSRRRDILVDDETLFAFYDQRIGKEVVSAKHFDSWWKLASRENAELLNFDKQMLIKEGA
DKVSQLDYPNFWHQGNLKLKLSYQFEPGADADGVTVHIPLPLLNQVEDSGFEWQIPGVRR
ELIIALIKSLPKPLRRNLVPAPNYAEAFLGRVKAMEMPLPDALAREFRRMTGVTLERENW
QWEQVPDHLKMTFRVVDEHNRKLLEGKDLTALKAQLKDKVQETLSKVADDGLEQSGLHIW
SFGDLPRSYEQKRGSYQVKAWPALVDEKESVAIRLFDSEQEQQKMMWRGQRRLLLLNVPS
PVKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGIDKLMGEAGGPAWDQTSFEQLRDK
VRGELNETVVTIAKQVEQILTAVFNINKRLKGRVDMTMALALSDIKAQLSGLVYRGFVTG
NGWQRLADTLRYLHGIERRLEKLPADPHSDRARMLKVQAVEQAYQAWRNKLPPQRQDDEE
VQSIRWMIEELRISYFAQQLGTPYPISDKRILQMMEQIAG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcccgatacttccccactggcagcgctctggtcacgcctcaacggtgtaatg
ctgcgcgatcgccagcggttacagcgccgtttacagggtgccagaaaagctaaaaatccc
gaggcacagcagggcattgccagcgagcttgagcaggactttatcgctgccgagcagcgc
gtggcccagcgccgtgcggccacgccagccattaccttcccggacaatctgccggtcagt
cagaagcagcaggatattgctgaggcgattcgcgatcaccaggtagtgattgtcgccggt
gaaaccggctcgggcaaaaccacgcagctgccgaaaatctgtctggcgctgggacgtggt
gtgacgggcctgattggtcatacgcagccgcgccgtctggccgcgcgtaccgtggcgaac
cgcattgccgatgagctcagcacttcgctgggcggctgcgtcggctataaagtgcggttt
aacgaccaggtcagcgacctgacgcagattaaactgatgaccgacgggattctgctggca
gagatccagcaggatcgtctgctgatgcaatatgacaccatcattattgatgaagcgcac
gaacgcagcctgaatatcgatttcctgctcggttatctgcgtgagctgttgccgcgtcgc
cccgatctgaaagtgattatcacttccgccaccatcgatccacagcgtttctcgcgtcat
ttcaataatgcgccggtgattgaagtctcaggccggacctatccggttgaagtgcgctat
cggccggtgatcgaagaggcggatgatggcgatcgtgaccagctgcaggcgatttttgat
gccgtagatgagctgggccgggaaagtcggggcgatatcctgatcttcatgagtggtgag
cgtgaaatacgcgataccgccgacgcgctgaacaaacgcgatctgccacacaccgaagtg
ctgccgctctatgcacggctgtcgaacgccgaacagaaccgggtgtttcagtcgcatagt
ggccgtcgtatcgtgctggcgaccaacgtcgcggaaacctcactgacggtgccggggatt
aaatatgtgatcgatcccggtacggcgcgtatcagtcgttacagttttcgtaccaaagtg
cagcgcctgccgattgaaccgatatcacaggcgtctgccaaccagcgtaaagggcgatgc
ggccgcgtttcagacggtatctgtatccgtctctacgcggaagatgacttcctgagtcgt
ccggcctttaccgatcctgaaatcctgcgcaccaacctggcgtcagtgatcctgcagatg
acctcgctgggcctcggcgatatcgctgccttcccgtttgtggaagcgcccgataagcgc
aatatccaggatggcgtccgcctgctggaagagctgggcgcgctgaccctgaacgaagag
accggtcactataagctcaccggttccgggcgtcagctggcgcagttgccggtggatccc
cgcctggcgcggatggtgctggaagcgcagaaatttggctgcgtgcgtgaagtgatgatt
atcaccgctggcctgtcgattcaggacccgcgtgagcgtccggcagataaaaaacaggcg
tccgatgaaaagcaccggcgctttgccgacaaagactccgacttcctcgcctatgtgaac
ctctggaactatctggcggagcagcagaaagcgctgtccgggaatgttttccgccgccag
tgcaaaagcgatttccttaactatctgcgcgtgcgggaatggcaggatatctacacccag
ctgcggcaggtggtgcgtgaactcggcattccggttaacagtgaaccggctgagctgcag
cctgtccactgcgcgctgttaagtggtctgctgtcgcatatcgggcagaaagataccgat
aagcaggagtataccggcgcgcgcaatacccgcttcgcgatcttccctggctccgggctg
tttaaaaagccgccgaagtggaccatggtggcggaactggtcgagaccagccgcctgtgg
ggccgcacggcgggccgtattgaaccggagtggattgagccgctggcacagcatctgatc
aagcgcagctacagtgaaccgcactgggagaaatcgcagggcgcggtgatggccagcgaa
aaagtcacgctctatggcctgccgattgtcgccgcccgtaaagttaactatggcagcatc
gatcccaccctgagccgtgaactgtttattcgtcacgcgctggtggagggcgactggcag
acccgacacgccttcttccgtgcaaaccagaagctgcgcagcgaagtggaagacctggaa
cacaaatcccgtcgtcgcgacattctggtcgatgacgaaacgctgtttgctttttatgac
cagcgcattggcaaagaggtggtctcggcgaagcatttcgacagctggtggaaactggcc
agtcgcgaaaacgcagaactgctgaatttcgacaagcagatgctgatcaaagagggtgcg
gataaagtcagtcagctcgactaccccaacttctggcatcagggcaacctcaaactgaag
ctgagttatcagtttgagccgggcgcagatgcggatggcgtgacggtacatattccgctg
ccgctgctgaaccaggtagaggatagcggttttgagtggcagatccccggtgtacgccgt
gaactaatcatcgcactgattaagtcgctgcccaagccgctgcgacgcaacctggtgcct
gcgcccaactacgccgaggcgttcttaggaagagtgaaagcgatggagatgccgctgcct
gatgcgctggcgcgggaatttcgccgcatgaccggcgtcacgctggagcgggaaaactgg
cagtgggaacaggtgcccgatcatctgaaaatgacgttccgggtagtcgacgagcacaac
cgtaaactgctggaaggtaaagatctcactgcgcttaaggcacagctgaaagacaaagtg
caggaaacgctgtcgaaagtggcggatgacgggctggagcagagcgggctgcatatctgg
agttttggcgatctgccacgcagttatgaacagaagcgcggcagctaccaggttaaagcc
tggcctgcgctggtcgacgagaaagagagcgtcgccattcgtctgtttgacagcgagcag
gagcagcaaaaaatgatgtggcgcggtcagcgtcgcctgctgctgctgaatgtgccgtca
ccggttaaatatctgcacgagaagctgccgaacaaagccaagctcggactctactttaac
ccttatggcaaagtgctggagctgattgacgactgcatcgcctgtggcatcgacaagctg
atgggggaagcgggcggtccggcctgggatcaaacctcttttgagcagttgcgtgacaaa
gtgcgcggcgaactcaatgaaaccgtggtgaccatcgcgaagcaggtcgagcagatcctg
acggcagtcttcaacattaataagcggctgaagggccgggtcgatatgaccatggcgctg
gcgttatctgacatcaaagcgcagttaagtggtctggtttatcgcggctttgtcaccggc
aacggctggcagcgactggccgatacgctgcgttatctgcatgggattgagcgccgactg
gaaaaactgcctgccgatccgcacagcgatcgtgcgcggatgttaaaagtgcaggcagtg
gagcaggcttatcaggcgtggcgcaataagttgccgccgcagcgtcaggatgatgaagag
gtgcagagcatccgctggatgatcgaagagctgcgtatcagttactttgctcagcagctg
ggtacgccttatcccatctcagataagcgtattctgcagatgatggagcagatagcgggt
taa
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