Pantoea vagans FDAARGOS_160: AL522_05205
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Entry
AL522_05205 CDS
T04302
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pagg
Pantoea vagans FDAARGOS_160
Pathway
pagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL522_05205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagg03019
]
AL522_05205
03400 DNA repair and recombination proteins [BR:
pagg03400
]
AL522_05205
Enzymes [BR:
pagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL522_05205
Messenger RNA biogenesis [BR:
pagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL522_05205
DNA repair and recombination proteins [BR:
pagg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL522_05205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMG57078
LinkDB
All DBs
Position
375041..376870
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AA seq
609 aa
AA seq
DB search
MATSAVLNQEALAQQVLQDTFGYQQFRPGQQTIINQALSGRDCLVVMPTGGGKSLCYQIP
ALVREGLTLVVSPLISLMKDQVDQLLANGVAAAYLNSTMTRDQQQTVMADCRTGRVKLLY
IAPERLMMDNFLESLAHWQPAMLAVDEAHCISQWGHDFRPEYGALGKMRQRFPELPVMAL
TATADETTRNDIVNLLHMQDPLIQISSFDRPNIRYTLVEKFKPTDQLLRYVQDQRGKCGI
IYCNSRAKVEDTAARLQSRGFSVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMAWLRKCLEEKVPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCDNCDICLDPPKRYDGLVEAQKAL
SGIYRVGQRFGMGYIVEVLRGSNNQRIREQGHDKLPVYGLGKDQSHEHWVSVLRQLIHLG
LVTQNIAMHSALQLTEAARPVLRGEVPLMLAVPRLITAKTKSSGPVKFHGGNYDRKLFAK
LRKLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGHRKLERFGKPFLVM
IKEHLDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacctcggcagttcttaatcaggaagcgctggcgcagcaggtattgcaggatacc
ttcggctaccagcagtttcgtcccggtcagcagacgatcattaatcaggcgctgagcgga
cgcgactgtctggtggtgatgcccaccggcggcggtaaatcgctctgttatcagatcccg
gcgctggtgcgcgaagggctgacactggtggtgtcgccgctgatctcactgatgaaagat
caggtcgatcagctgctggcgaacggtgtggcggcagcctatctcaactccactatgacg
cgcgatcagcagcagacggtgatggctgactgccgtaccggccgggttaagctgctctac
atcgcccctgaacgcctgatgatggataatttcctggaaagtctggcgcactggcaaccg
gcgatgctggcggtagatgaggcgcactgtatttcacagtggggccacgatttccgtccg
gaatatggtgcactcgggaagatgcgtcagcgcttcccggaattaccggtcatggcattg
acggcgactgcggacgaaaccacccgcaacgacattgttaacctgctgcacatgcaggat
ccgttgattcagatcagcagctttgaccgccccaatattcgctacacgctggtggaaaaa
ttcaaacccaccgatcagctgctgcgctacgttcaggatcagcgcggcaaatgcggcata
atctactgcaacagccgggcgaaggtggaagacaccgccgcgcgactgcaaagccgtgga
ttcagcgtcggggcgtatcatgccggcatcgacagcgaacagcgtgcccgcgtgcaggaa
gcgttccagcgtgacgatctgcaaatcgtagtggcgaccgtggcttttggtatgggtatc
aacaagcccaacgtccgttttgtggtccacttcgatattccgcgcaacatcgaatcctac
tatcaggaaaccggacgagccggacgtgatggtctgcccgccgaagcgatgatgctttat
gatccggccgatatggcctggctgcgtaaatgcctggaagagaaagtgccggggcccttg
caggatattgagcgtcacaagctcaacgcgatgggcgcgtttgctgaagcgcagacctgc
cgccgcctggtgctgctgaattactttggcgagggtcgccagcagccgtgcgacaactgc
gatatctgccttgatccgccgaaacggtatgacggcctggttgaagcgcaaaaagcgctc
tccggcatctatcgcgtgggccagcggttcggtatgggctatatcgttgaggtcctgcga
ggatccaacaaccagcgcatccgtgaacagggtcatgacaagctgccggtttatggactg
ggcaaagatcagagtcacgaacactgggtcagcgtgttacgtcagttaatccatctgggg
ctggtgacgcagaacatcgctatgcactcggcactgcaactgaccgaagcagcgcggccg
gtgctgcgcggtgaagtgccactgatgctggcggtgccgcgtttaattaccgcgaaaaca
aagagcagcggtccggtgaagtttcacggtggtaactacgatcgcaaactgttcgctaag
ctgcgtaagctgcgaaaagcgatcgccgacgaagagaatattccgccttacgtggtgttc
aatgatgccacactgatagagatggcagaacagatgccggtcagcgcgtccgagatgctt
agcgtcaacggcgtgggtcaccgcaaactggagcgcttcggcaaacccttcctggtgatg
atcaaagagcatcttgatgatgaagagtaa
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