Pantoea vagans FDAARGOS_160: AL522_05460
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Entry
AL522_05460 CDS
T04302
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pagg
Pantoea vagans FDAARGOS_160
Pathway
pagg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pagg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL522_05460 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagg03021
]
AL522_05460 (rpoB)
03400 DNA repair and recombination proteins [BR:
pagg03400
]
AL522_05460 (rpoB)
Enzymes [BR:
pagg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL522_05460 (rpoB)
Transcription machinery [BR:
pagg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL522_05460 (rpoB)
DNA repair and recombination proteins [BR:
pagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL522_05460 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF8806
Motif
Other DBs
NCBI-ProteinID:
AMG57121
LinkDB
All DBs
Position
425335..429363
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIA
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQFTTPQILDIFFEKVVFEIRDNKLQME
LVPERLRGETATFDIEANGTVYVEKGRRITARHIRQLEKDGIQHIEVPVEYIAGKVVAKD
YIDESTGELIVAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVIDGLVS
DEIHYLSAIEEGNYVIAQANAPLDDNGAFVDDLVTCRNKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMHAGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIQNVLISGGVEADKLDKLPRERWLELGLTDEAKQNQLEQLAEQYDE
LKHEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQRAYDLGTDLRQRVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccgcaa
gtactggacataccttatctcctttccatccagctcgactcgttccagaagtttatcgag
caagatccagaaggtcagtacggactggaagctgcattccgctctgtattccctattgcg
agctacagcggcaactctgagttgcagtatgtcagctaccgcctgggtgaacctgtcttt
gacgtgaaagagtgtcagatccgtggcgtgacctattcggcaccgctgcgcgtgaaactg
cgtctggtgatctatgagcgcgaagcgccagaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgagattccgctcatgaccgacaacggtacctttgttatcaatggt
accgagcgcgttatcgtttctcagctgcaccgtagtcccggcgtgttctttgatagcgat
aagggtaaaacccactcatcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggttcatggctcgactttgagtttgacccgaaagataacctgtttgtccgtattgaccgt
cgtcgtaagctgccggccactatcatcctgcgcgcgttacagttcacgacacctcagatc
ctcgatatcttcttcgagaaagtggtgtttgaaatccgtgacaacaagctgcagatggag
ctagtgcctgagcgcctgcgcggtgaaaccgctaccttcgatattgaagcgaacggcacc
gtctacgtcgaaaaaggtcgccgcattactgcgcgccatattcgtcagctggaaaaagat
ggtattcagcacatcgaagtcccggttgaatatatcgccggcaaagtggtcgctaaagat
tacatcgatgagagcaccggtgagctgattgttgcagcgaacatggaactgtcactggat
ctgctggctaaactgagccagtccggtcacaagcgcatcgaaacgctgttcaccaacgat
ctggaccacggtccatatatgtccgagaccctgcgtgtcgacccaaccagcgatcgcctg
agcgcactggttgagatctaccgcatgatgcgtcctggtgagccgccaacacgcgaagct
gcagagaacctgtttgagaacctgttcttctcagaagatcgttacgatctttctgcggtc
ggtcgtatgaagttcaaccgttcattgctgcgtgatgaaatcgaaggttcaggcatcctg
agcaaagatgacatcatcgaagtgatgaagaagctgatcgacatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggtaaccgtcgtattcgttcagtgggtgaaatggct
gagaaccagttccgtgtcggtctggtgcgtgttgagcgtgcggttaaagagcgtctgtct
ctgggcgaccttgatacgctgatgccacaggacatgatcaacgcgaagccgatttcggct
gcggtgaaagagttctttggttcaagccagctttctcagtttatggatcagaacaacccg
ctgtcagagattacgcacaaacgtcgtatctctgctctcggcccgggtggtttgacgcgt
gagcgtgccggcttcgaagtgcgtgacgtacacccaacgcactacggtcgtgtctgccca
atcgaaacccctgaaggtccgaacatcggtctgattaactccttgtctgtctatgcacag
accaatgagtacggtttccttgagacaccttatcgccgtgttatcgacggtctggtttct
gacgagattcactacctctctgctatcgaagagggtaactacgttatcgctcaggcgaac
gcccctctggatgacaacggcgcgtttgttgatgacctggtcacctgccgtaacaaaggc
gaatcaagtctgttcagccgcgatcaggttgactacatggacgtttccacccagcaggtg
gtttctgtcggtgcatccctgatcccgttcctggaacacgatgacgccaaccgcgccctg
atgggtgcgaacatgcaacgtcaggccgttccgactctgcgtgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaacagccgtggcgaaacgt
ggcggtaccgtacagtacgttgacgcatcacgtatcgttatcaaagttaacgaagacgaa
atgcatgctggcgaagccggtatcgacatttacaacctgaccaaatatacccgttctaac
cagaacacctgcatcaaccagatgccatgtgtttctctgggtgagccggttgagcgcggc
gacgtgctggcagatggcccgtccaccgatctgggtgagctggcactgggccagaacatg
cgcgtggcattcatgccgtggaacggctacaacttcgaagactccatcctggtctccgag
cgcgtggttcaggaagatcgctttacgactatccacatccaggaactggcttgcgtgtcg
cgtgacaccaaactggggccggaagagatcactgctgacatcccgaacgtgggtgaagcc
gcactctctaaactggatgagtcaggcatcgtctacatcggtgctgaagtgaccggtggc
gacattctggtcggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagaaaaa
ctgctgcgtgctatcttcggtgaaaaagcctctgacgtgaaagattcgtcactgcgcgtg
ccgaatggcgtgtcaggtaccgtgatcgacgttcaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgcttgaaatcgaagagatgcagctgaagcaggctaaaaaagacctg
tctgaagaactgcagatcctggaagcgggcctgttcagccgcatccagaacgtactgatt
tcgggtggcgtcgaagcagacaaactggacaagctgccgcgcgagcgctggctggaactg
ggtctgactgacgaagccaagcaaaaccagctggagcagctggcagagcagtacgacgaa
ctgaagcacgagtttgagaaaaaactcgaaggtaagcgtcgtaagatcacccagggcgat
gatctggcaccaggcgtgctgaaaatcgtcaaggtttatctggctgttaagcgtcagatt
cagccgggtgacaaaatggcaggccgtcacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggttgacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattctggaaacccacctgggtatggca
gcgaaaggcatcggcgagaaaattaacgccatgctgaagaagcaggaagaagtcgcgaaa
ctgcgcgaattcatccagcgcgcttatgacctgggtaccgatctgcgtcagcgagttgat
ctgaacaccttctccgatgacgaagtactgcgtctggctgagaacctgaagaaaggtatg
ccaatcgccacgccggtgtttgatggcgcgaaagagagcgagatcaaagagctgctgcag
ctcggcggcctgccttcttccggtcagattaccctgtttgacggccgtaccggtgagcag
ttcgaacgtcaggtaaccgttggctacatgtacatgctgaaacttaaccacctggttgat
gacaagatgcatgcacgttctaccggttcctacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgctttggtgagatggaagtatgggcactggaagca
tatggtgccgcgtataccctgcaggaaatgcttaccgttaagtctgatgacgtcaacggc
cgtaccaagatgtataaaaacatcgttgacggtaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagattcgctcgctgggtatcaacatcgagctggaa
gacgagtaa
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integrated database retrieval system
