KEGG   Pantoea vagans FDAARGOS_160: AL522_12355
Entry
AL522_12355       CDS       T04302                                 
Symbol
icmF
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
pagg  Pantoea vagans FDAARGOS_160
Pathway
pagg03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:pagg00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    AL522_12355 (icmF)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pagg02044]
    AL522_12355 (icmF)
Secretion system [BR:pagg02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   AL522_12355 (icmF)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical OppC_N Xpo1
Other DBs
NCBI-ProteinID: AMG58359
LinkDB
Position
1865287..1868916
AA seq 1209 aa
MLNILFAVLTSRLAWGFVGITALSFIIWVIGPVFSIVDSRPLEPEQNRMISIALLYLVWG
LGQAIPRLYNYWLNRKLMSSLETGKSDAPEADRQRLTSEEQVLAGRFSEATEMLRKAHFQ
RHSSKGTPFWAQRFGRQYLYQLPWYMIIGAPGAGKTTALVNSGLQFPLADKFGKSALRGI
GGTRNCDWWFTNDAVLLDTAGRYSTQESQQERDASEWHHFLDLLRKYRGRQPINGVIVTL
SVSDLLSQSPEALRNQALALRQRLMELHDRLGIRFPVYVLVTKADLLKGFRSYFASLDKA
QREQIWGFTFPWAKASAADFELNSQFQQEYSLLQQRLDAGLADRLLTESDAQARAESYLF
PQEFAALRPLLADALDTLFARSDFETQFAPRGIYFASGTQEGLPFDRVMGELNRALNLPG
QQAGESGSWDQVDKDAPIPQNKGQSFFLKGVLENVVFQESGLAGSNRWWELRNRAGLWSG
YLALLLLLLAAGGLWLTSYSKNKAYLQEMAAKAPQVEQLGDQLQKQVNGDLFALVPYLNT
LLHLPESADFSLESPPLTRRMGLYRGTEVSDATRALYDKALKQLLLPQVAQNITRWLRND
NGSDADYSYEALKAYQMLYQPKHYDGKFLQAWLMLNLSRELPQNVTQQQVKQLAWHLQQL
LETQIHSSPYAKDDALVKREQALINQMPLSQRVYGRLKRLLQRDDSLQPVTLAALGGPQS
ELVFSRKSGKSVNDGVAGLYTPDGYWQHVDKQIGPVTQALYQDDLWVLDGAAPQQKSEQT
DLAVRQLYVQDYIRQWEQFLSDIQLNSSADLSQRINTARLLSGNHSPLRQLVINLSNLLT
LNRAQPDEKTAQAAKPWDNSATRTLEALFTSPEAAAARGQAAAQASPEQAVAVHFAPVLE
LAQPLQQGSKVLAVDDFLHQIDDLYRYLTAVQDAANSGMPPPASDAISRLQASAGRLPGS
LQNMVSSMAVGASSDAQRRDMDNVRKRITMEVGSFCRQAIAGRYPLVRSARSEVTPDDLA
RMFAPGSGMMDSFFRDNLASKVDTTNASWRFTPGIDGKTLPGGEALLRPFQQAQSIRDAF
FANGATTPGFRVTLRTVKMDNDILNLTLDVDGQQLRYSHGPQAVQMVSWPGPGGTSQVRM
QLGLTNGTTSTLVTSGPWALNRFFDRARVTAAGGLTREATFSVEGHQVTLSFTPGSIRNP
FQLPGFSCP
NT seq 3630 nt   +upstreamnt  +downstreamnt
atgctgaatattctgtttgcggtgctgaccagccgccttgcgtggggctttgtcggcatc
accgcgctctcttttatcatctgggtgattggcccggtcttctctatcgttgattcgcgg
ccacttgagccagagcagaaccgcatgatcagtattgcgctgctctatctggtctgggga
ctggggcaggcgattccacggctatacaattactggcttaaccgcaagctgatgtcgagt
ctggaaaccggcaaaagcgatgcgccggaagccgatcgtcagcgtctgaccagtgaagag
caggtgctggcgggccgtttctccgaagctactgaaatgctgagaaaggcgcacttccag
cgccacagcagcaaaggcacgccgttctgggcgcagcgctttggtcggcagtatctctat
cagctgccgtggtacatgattatcggcgcacccggtgccggtaaaaccaccgcgctggtc
aactccggcctgcagtttccgctggcggataagtttggcaagtcggccctgcgcggcatt
ggcggcacccgcaactgcgactggtggtttactaatgacgccgtgctgctcgataccgcc
gggcgttacagcacccaggagagtcagcaggagcgggatgccagcgaatggcaccatttc
ctcgatctgctgcgtaaatatcgcggacgtcagccgatcaacggcgtcatcgtcaccctg
agcgtctccgatctgctgagtcagtcgcccgaggcactgcgcaaccaggcgctggcgctg
cgtcagcgtctgatggagttgcacgatcgtctcggcatccgtttcccggtttatgtgctg
gtcaccaaagcagacctgctcaaaggtttccgcagctacttcgcctcgctggataaagcg
cagcgtgaacagatctggggattcacctttccgtgggcgaaggcatccgccgccgatttc
gagctgaacagccagttccagcaggagtattccctgctgcaacagcggctcgatgccgga
ctggccgatcggctgctgacggagagcgacgcgcaggcgcgtgccgaaagctatctcttc
ccgcaggagttcgctgcgctgcgtccgttgctggccgacgcgctcgacacgctgttcgcc
cgctccgattttgaaacccagttcgcgccacgcggcatctactttgccagcggcacccag
gaaggtctgccgtttgaccgggtaatgggcgagctgaaccgtgccctgaatctgccaggc
cagcaggcgggcgaatcgggcagctgggatcaggtcgataaggatgccccgattccgcag
aacaaagggcagagtttcttcctgaaaggcgtgctggaaaacgtggttttccaggagtcg
ggtctggcgggcagcaaccgctggtgggagctgcgcaaccgcgccggactctggtcaggc
tatctggcgctgctgttgctattactggccgcgggcggtctgtggctcaccagctacagc
aagaacaaagcctatctgcaagagatggccgctaaagcgccgcaggtggagcagctgggc
gaccagcttcagaagcaggtcaacggcgatctctttgcgctggtgccttatctcaacacc
ctgttgcatctaccggaaagcgccgacttctcgctggaatcgccgccgctgacgcgccgt
atgggcctttatcgtggcaccgaggtcagtgatgcgacgcgtgcgctctacgacaaagcg
ctgaagcaactgctgttgccgcaggtggcgcagaacatcacccgctggctgcgcaatgac
aacggcagcgacgctgactacagctatgaagcgctgaaggcgtatcagatgctctaccag
ccgaagcactacgatggaaaattcctgcaggcatggctgatgctgaatctgtcgcgcgag
ctgccgcagaacgtgacacaacagcaggtaaaacagctggcgtggcatctgcaacagctg
ctggagacgcagattcactcatcgccgtatgcgaaggatgacgcgctggtaaagcgcgag
caggcgctgattaatcagatgccgctgtcacagcgcgtctacggacggctgaagcgcctg
ctacaacgtgatgacagcctgcagccggtgacgctggcggcgctgggcggtccccagagc
gagctggtgttttcccgcaaaagcggtaaatcggtgaatgacggtgtggcaggtctctat
acgccggacggctactggcagcatgtggacaagcagattggtccggtgacccaggcgctc
tatcaggacgatctctgggtgctggacggcgctgcgccacagcagaagagtgagcagacc
gatctcgcggtgcgccagctctatgtgcaggactacatccgccagtgggagcagttcctg
agcgatatccagctcaacagcagcgccgatctctcgcagcgtattaacactgcgcgcttg
ctgtcgggcaaccactcgccgctgcgccagctggtcatcaacctcagtaacctgctgacg
ctgaaccgcgcgcagcctgatgagaaaaccgcgcaggcggcaaagccgtgggataacagc
gccacccgcacccttgaagcgctgtttacctcgcctgaagcggctgcggcgcgtgggcag
gcggcagcgcaggcgtcaccggagcaggcggttgccgtgcattttgcgcccgtgcttgag
ctggctcagccattacagcagggcagcaaggtgctggcggtggatgatttcctgcaccag
attgacgatctctatcgctacctcacggcggtgcaggatgccgccaacagcgggatgccg
ccaccggccagcgatgcgatcagtcgtttgcaggccagcgccggacgtctgcccggttcg
ctgcagaatatggtctccagtatggcggtcggggccagcagcgatgcgcagcgtcgcgac
atggataacgtccgtaaacgcatcaccatggaagtgggcagtttctgtcgtcaggcgatc
gccggccgttatccgctggtgcgttccgctcgcagcgaggtaacgcccgacgatctggcg
cggatgttcgcccccggcagcggcatgatggacagcttcttccgcgacaacctggccagc
aaagtcgacaccaccaacgcctcatggcgctttacgccaggtatcgacggcaaaacgctg
ccgggcggcgaagcgctgctgcgtcctttccagcaggcgcagtcaattcgtgatgcattc
tttgccaacggtgcgactacgccaggcttccgcgtcacgctgcgcaccgtaaaaatggac
aacgacattcttaatctgacgctggatgtggatggacagcaattgcgttacagccacggg
ccacaggcagtacagatggtcagctggcccggtccgggcggcaccagccaggtgcggatg
cagttgggcctgaccaacggcactacctcaacgctggtgaccagtgggccctgggcactc
aatcgcttctttgatcgcgcccgtgttaccgcggccggcggcctgacccgcgaagccacg
ttcagcgtggaggggcatcaggtcacgctgtcgtttacccctggcagcattcgtaacccg
ttccagcttcccggctttagctgcccctga

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