Pantoea vagans FDAARGOS_160: AL522_12725
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Entry
AL522_12725 CDS
T04302
Symbol
nirD
Name
(GenBank) nitrite reductase (NAD(P)H) small subunit
KO
K00361
nitrite reductase [NAD(P)H] [EC:
1.7.1.4
]
Organism
pagg
Pantoea vagans FDAARGOS_160
Pathway
pagg00910
Nitrogen metabolism
pagg01100
Metabolic pathways
pagg01120
Microbial metabolism in diverse environments
pagg01310
Nitrogen cycle
Module
pagg_M00531
Assimilatory nitrate reduction, nitrate => ammonia
pagg_M00615
Nitrate assimilation
Brite
KEGG Orthology (KO) [BR:
pagg00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
AL522_12725 (nirD)
Enzymes [BR:
pagg01000
]
1. Oxidoreductases
1.7 Acting on other nitrogenous compounds as donors
1.7.1 With NAD+ or NADP+ as acceptor
1.7.1.4 nitrite reductase [NAD(P)H]
AL522_12725 (nirD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox
Rieske_2
NIR_SIR
Rubredoxin_C
Pyr_redox_3
Fer2_BFD
NIR_SIR_ferr
DAO
NAD_binding_8
GIDA
AlaDh_PNT_C
FAD_oxidored
NAD_binding_9
Glyco_trans_4_4
Rieske_4
Motif
Other DBs
NCBI-ProteinID:
AMG60272
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All DBs
Position
1949664..1953728
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AA seq
1354 aa
AA seq
DB search
MRQRLLVIGNGMAGMQMVESLLQRAPQRYAITVIGREPHGNYNRVLLSPVLAGEKSFTDT
LIHDRDWYQRHGVTLLNGETVQQVDLAARTVQTDQRQLDWDRLVFATGSQPRLPAIPGID
AESVMGFRSIADVRRLLAGQGPVVILGGGFLGIEAAAALRARGREVTLVHHKPWLLDRQL
DAKAGELLLAALAQRGIHCELNSGLTAIDEAGVTLTCGRHCAATQVVIAIGVQPEVTLAQ
AAGLPCQRGILVDGQLRSAIPDVYAVGECCEIAGETFGLVAPCLAQAQILAAQLTGSPLA
DFVSEPLATRLKVSGISLFSAGDVSEASSISSFDPISGDYRRLFLRQGRLCGVLLSGDTR
QGAAWLERLQRADPVTLDALFDHDQPEPQPQAAESPEMSKPVLAVIGHGMVSHHFLEQLV
ARELHQHYHIVVYGEERQQAYDRVHLSDYFNGKTAGDLSLVGADFFALHGIELRSSCTVV
AIDRQQRSLRDSAGNELAWDKLVLATGSRAFVPPVPGHDGERCFVYRTLDDLDAIAACAR
HSQRGIVIGGGLLGLEAANALRQLGPETHVVEFAPRLMAVQLDEGGALMLRQKIDALGVT
VHTSKQTELIEQQPDGSVVLRFADGSHLPGDLVLFSAGIRPRDELAREAGLTLGPRGGIE
INDRCQTSDDDVFAIGECALWNGQIFGLVAPGYQMARVLAGHLAAEPAAFSGADMSTKLK
LLGVEVASFGDAHGRTAGSQHYHWTDGPKGIYKKIVVSAEGTRLLGGVLVGDSSDYATLL
QMMLNALPLPAAPESLILPALAGAPKASGVAALPDSAQVCSCYNVSKGDICAAVKGGCGE
MSSIKSCTRAATGCGGCAALVKQVMEFQLETLGVEVKKDVCDHFSYSRQELYHLVRAGEF
RTFDALLASHGRGQGCEVCKPLVGSILASCWNDYLLKPAHLPLQDTNDRYFANIQKDGTY
SVVPRVPAGEITPQGLIAIGEVAARYDLYTKITGGQRIDLFGARLDQLPAIWQTLLEAGF
ETGHAYGKSLRTVKSCVGSTWCRYGVQDSTAFAIALENRYKGLRAPHKIKMAVSGCTREC
AEAQSKDIGVIATEKGWNLYVCGNGGMKPRHADLFASDLDDATLLRYVDRLLMFYIRTAN
RLQRTSVWLDNLEGGLDYLRQVVIEDSLGLGETLEQEMQRVVEAYQCEWQTTLADPSRLA
LFTPTINSEQPDETLHYSRVRGQRQPEAVAARPLLQLPAEPWSAVCALEAIPPEAGIGAR
LGSERVALFRFGDAFYALEDREPGSDASVLSRGILGDVGGEPVVISPLYKQRVRLRDGQS
LDNPQHQLRCWPVKLEAGQIWLANRPQNPLAQAS
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaacggttgctggtgataggcaatggcatggcggggatgcagatggtggagagc
ctgctgcagcgtgcgcctcagcgttacgccattacggtcattggccgcgagccgcacggc
aactacaaccgcgtgctgctgtcgccggtgctggcgggtgaaaagtccttcactgacacc
ctgatccacgatcgcgactggtatcagcggcacggcgtgacgctgctgaacggtgaaacc
gtgcagcaggtcgatctggcggcgcggacggtgcagaccgatcagcgccagctcgactgg
gatcggctggtgtttgccaccggatcgcagccccgtctgcccgcgattcccggcatcgac
gcagagtccgtcatgggttttcgcagcatcgccgacgtccggcgactgctggcgggccag
ggaccggtagtgatcctgggcggcggctttctcggcattgaagcggcggcggcactccgc
gcccgtggccgtgaggtgacgctggtgcaccataaaccctggctgctggatcgccagctg
gatgcaaaagcgggtgagctgctgctggcggccttagcgcaacgcggtatccactgcgaa
ctgaacagcggactcacggcgattgacgaggcgggcgtgacgctgacctgcgggcgtcac
tgcgccgccacgcaggtggtgatcgccatcggtgttcagcctgaggtgacgctggcgcag
gcggcagggctaccgtgtcagcgcggcattctggtcgatggtcagctgcgcagcgccatt
cccgatgtttacgccgtgggcgagtgctgcgaaatcgcgggcgaaacctttggcctggtc
gcgccctgcctggcgcaggcacagattctggcggcgcagctgacgggatcgccgctggcg
gatttcgtcagtgagccgctggcgacgcggctcaaagtcagcggcatttcgctgttcagc
gccggcgacgtcagcgaggcatcctccatcagcagttttgatcctatctctggcgactac
cgccgcctttttctccgtcagggccgcctctgtggcgtgctgctctctggcgacacccgg
cagggcgcggcgtggctggaacgtctgcagcgcgccgaccctgtcacgctcgatgccctg
ttcgatcacgatcaacctgaaccgcagccacaggctgcagagagtcctgagatgagtaaa
ccggttttagccgtcattggtcacggcatggtcagtcaccactttcttgaacagctggtt
gcccgtgaactgcatcagcactatcacatcgtggtttatggcgaggagcgccagcaggct
tacgatcgggtgcatctgtcagactatttcaacggtaaaacggccggcgatctgtcgctg
gtcggcgcggacttctttgccctgcacggtattgaactgcgcagcagctgcacagtggtg
gccatcgatcgccagcagcgcagcctgcgtgacagcgcgggcaatgagctggcgtgggat
aagctggtgctggcgaccggctctcgtgcttttgtgccgccggtgccgggccacgacggc
gaacgctgctttgtctatcgcacgctggacgacctggatgccattgccgcctgcgcccgt
catagccagcgcggtatcgtcattggcggcggcctgctaggtctggaggcggcgaatgcg
ctgcggcagctcgggccggagacgcatgtggtggagtttgcaccacgcctgatggcggtg
cagctcgatgagggtggggcgctgatgctgcgtcagaagatcgatgcgctgggcgtgacg
gttcatacctcaaaacagaccgagctgattgagcagcagcccgacggcagcgtggtgctg
cgttttgctgacggcagccatttacccggcgacctggtgctgttctccgccggtatccgt
ccgcgcgatgagctggcgcgcgaggcgggcctgacgctcgggccgcgcggcggcattgag
attaacgatcgctgtcagaccagtgatgacgacgtgtttgccattggtgaatgcgcgctg
tggaacggtcagatctttggcctggtcgcgccgggctatcagatggcgcgtgtgctggcc
ggacatctggcggctgaaccggctgccttcagcggcgcggacatgagcaccaaactgaaa
ctgctgggcgtggaggtggcctcatttggtgatgcccatggccgcacggcgggcagccag
cactatcactggaccgacgggccaaaaggcatctacaagaaaatcgtggtctctgcggag
ggcacccgactgctgggcggcgtgctggtcggggacagcagcgattacgccacgctgctg
cagatgatgctcaacgctttacccttgcctgccgcgccggagagcctgatcctgcctgcg
ctggccggtgcgccgaaagcgtcaggggtcgcggcgttgcccgacagcgcccaggtttgc
tcctgttacaacgtcagcaagggcgatatctgcgcggcggtgaaaggcggatgcggtgag
atgagcagcatcaaaagctgcaccagagcggccaccggctgcggcggctgtgcggctctg
gtgaagcaggtgatggagtttcagctggaaactctcggcgtcgaggtgaaaaaagatgtc
tgcgaccacttcagttattcacggcaggagctttatcacctggtacgggccggtgagttc
agaacctttgatgcgctgctggcctcacacggcaggggtcagggctgtgaagtgtgcaag
ccgctggtggggtcgattcttgcctcctgctggaacgactatctgctgaaaccggcgcac
ctgccgctacaggataccaacgaccgctacttcgccaacatccagaaagatggcacctat
tcggtggtgccgcgtgtcccggcaggcgaaatcacgccacaggggctgatcgccatcggt
gaagtggcggcgcgttatgacctttacaccaaaatcaccggcgggcagcgtatcgacctg
tttggcgcgcgccttgatcagctgcccgctatctggcagacgctgcttgaggccggtttt
gaaaccggtcacgcctacggcaagtcgctgcgcaccgtgaagtcctgtgtcggatcgacc
tggtgccgctacggcgtgcaggattcgaccgccttcgccatcgcgctggagaaccgttac
aagggactacgcgccccacacaaaatcaaaatggcggtttcgggctgtacccgcgagtgt
gcggaagcgcagagcaaagatatcggtgtgatcgccaccgaaaagggctggaacctctat
gtgtgcggcaatggcggcatgaagccgcgccacgccgatctgttcgccagtgacctcgac
gacgccacgctgctgcgctatgtcgatcgcctgctgatgttctatatccgtacggctaat
cgtctgcagcgcaccagcgtctggctggacaatctggaaggcggtcttgattacctgcgg
caggtggtgattgaggacagccttgggctgggtgagacgctggagcaggagatgcagcgg
gtggtggaggcgtatcagtgcgagtggcagaccacgctggcggacccgtcgcggctcgca
ctgtttacgccgacgatcaacagcgagcagcccgatgaaaccctgcactacagccgggta
cgcggccagcggcagcctgaagccgtggctgcgcgcccgctgctgcagctgcccgccgag
ccgtggagcgccgtctgcgcactggaggcgattccgccagaagcggggatcggggcgcgg
ctcggcagcgagcgtgttgcgctgttccgctttggcgacgcgttctatgcgctggaggat
cgtgaacccggcagcgatgccagcgtgctgtcgcgcgggattctgggtgacgtcggcggc
gagccggtggtgatctctccgctctacaagcagcgggtgcggctgcgtgacgggcagagt
ctggataatccgcagcaccaactgcgctgctggccggtgaagctggaagcagggcagatc
tggctggcaaaccgcccgcaaaatccgctggcgcaggcatcatga
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