Pantoea vagans FDAARGOS_160: AL522_14400
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Entry
AL522_14400 CDS
T04302
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pagg
Pantoea vagans FDAARGOS_160
Brite
KEGG Orthology (KO) [BR:
pagg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagg03019
]
AL522_14400
Enzymes [BR:
pagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AL522_14400
Messenger RNA biogenesis [BR:
pagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AL522_14400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
PhoH
AAA_23
nSTAND3
HA2_N
NACHT
AAA_30
ResIII
SLFN-g3_helicase
ABC_tran
TsaE
DUF7217
Motif
Other DBs
NCBI-ProteinID:
AMG58725
LinkDB
All DBs
Position
complement(2303026..2306928)
Genome browser
AA seq
1300 aa
AA seq
DB search
MSSPDTSPLAALWPRLDGVMLCDRQRLQRRLQGARKAKNPEAQQGIARELEQEFIAAEQR
VAQRRAATPAITFPDNLPVSQKQQDIAAAIRDNQVVIVAGETGSGKTTQLPKICLALGRG
ITGLIGHTQPRRLAARTVANRIADELSTSLGGCVGYKVRFNDQVSDLTQIKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FNNAPVIEVSGRTYPVEVRYRPVVEEADDGDRDQLQAIFDAVDELGRESRGDILIFMSGE
REIRDTADALNKRDLPHTEVLPLYARLSNAEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEDDFLSR
PAFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGALTLNEE
SGHYKLTGSGRQLAQLPVDPRLARMVLEAQKFGCVREVMIITAGLSIQDPRERPAEKKQA
SDEKHRRFADKDSDFLAYVNLWNYLAEQQKALSGNLFRRQCKSDFLNYLRVREWQDIYTQ
LRQVVRELGIPVNSEPAELQPVHCALLSGLLSHIGQKDTDKQEYTGARNTRFSIFPGSGL
FKKPPKWAMVAELVETSRLWGRTAGRIEPEWIEPLAQHLIKRSYSEPHWEKSQGAVMAAE
KVTLYGLPIVAARKVNYGSIDPTLSRELFIRHALVEGDWQTRHAFFRANQKLRSEVEDLE
HKSRRRDILVDDETLFAFYDQRIGKEVVSAKHFDSWWKKASRENAELLNFDKQMLIKKGA
DKVSQLDYPNFWHQGNLKLKLSYQFEPGADADGVTVHIPLPLLNQIEDSGFEWQIPGVRR
ELIISLIKSLPKPLRRNLVPAPNYAEAFLGRVNAMEMPLPDALSREFRRMTGVTLERENW
QWEQVPDHLKMTFRVVDEHNRKLLEGKDLTALKAQLKGKVQETLSKVADDGLEQSGLHIW
SFGELPRSYEQKRGSYQVKAWPALVDEKESVAIRLFDSEQEQQKMMWRGQRRLLLLNVPS
PVKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGIDKLMGEAGGPAWDQTSFEQLRDK
VRGELNETVVTIAKQVEQILTAVFNINKRLKGRVDMTMALALSDIKAQLSGLVYRGFVTG
NGWQRLADTLRYLNGIERRLEKLPADPHSDRARMLKVQAVEQAYQAWRNKLPPQRQDDEE
VKNIRWMIEELRISYFAQQLGTPYPISEKRILQTMEQIAG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcccgatacttccccactggcagcgctctggccacggctcgacggtgtcatg
ctgtgcgatcgccagcgtctgcagcgccgcttgcagggtgccagaaaagctaaaaatccc
gaggcacagcagggcattgcccgcgagctggagcaggaatttattgctgctgaacagcgc
gtggcccagcgccgcgcggcaacgccagccataacattcccggacaatctgccggtcagt
cagaagcagcaggatattgcggcggcgattcgcgacaatcaggtggtgattgttgcgggt
gaaaccggttcaggtaaaaccacgcagctgccgaaaatctgcctggcattgggacgcgga
atcacgggtctgattggacatacccagccgcgtcgtctggctgcgcgcactgtggcgaat
cgcattgctgatgagctcagtacctcactgggcggctgtgtcggctataaggtgcggttt
aacgaccaggtcagcgacctgacgcagattaaactgatgaccgacggtatcctgctggcg
gagatccagcaggatcgcctgctgatgcaatatgacaccatcatcattgatgaggcgcac
gagcgcagcctgaatatcgatttcctgctcggttatctgcgtgagctgctgccgcgccgc
cccgatctgaaagtgattattacctcggcgaccatcgatccgcagcgcttctcgcggcac
ttcaacaacgcgccggtgattgaagtttccggccggacttacccggtcgaagtgcgctac
cggccggtggtagaagaagcggatgatggcgatcgcgatcagctgcaggcgatatttgat
gcggtggatgagctgggacgagagagtcgcggcgatattctgattttcatgagcggtgag
cgcgaaatccgcgacaccgccgatgcgctgaacaagcgcgacctgccgcacaccgaagtg
ctgccgctctatgcgcgactgtcgaacgccgaacagaaccgggtatttcagtcgcacagt
ggccgtcgcatcgtgctggcgaccaacgtggcggaaacttcactgacggtgcctgggatc
aaatatgttatcgatccaggcacggcacgtatcagtcgctacagcttccgcaccaaggtg
cagcgcctgccgattgagccgatatcgcaggcctccgccaaccagcgaaaagggcgttgc
ggtcgtgtttcagacggtatctgtattcgtctctactcggaagatgacttcctgagccgt
ccggcctttaccgatccggaaatcctgcgtaccaacctggcatcggtgatcctgcagatg
acctcgctgggactcggcgatatcgctgctttcccgtttgtggaagcgcccgataagcgc
aacattcaggatggcgttcgcttgctggaagagctgggtgcgctgaccctgaatgaggag
agcggacactacaaactcaccggctccggtcgtcagctggcacagttgccggtcgatccg
cgtctggcgcgaatggtgctggaagcgcagaaatttggctgcgtgcgtgaagtgatgatc
atcaccgccggtctgtcgattcaggacccgcgcgagcgcccggcagagaaaaagcaggcg
tccgatgagaagcaccggcgctttgccgacaaagactccgacttcctcgcctatgtgaac
ctctggaactacctggcggagcagcagaaagcgctgtcgggcaaccttttccgccgccag
tgcaaaagcgacttcctgaactatctgcgcgtacgggaatggcaggatatttatacccag
ctgcggcaggtggtgcgagaactgggcattccggttaacagcgaaccggctgagctgcag
cccgttcactgcgcgctgcttagcggtctgctgtcgcacatcggccagaaggacaccgac
aagcaggagtacaccggcgcacgcaatacccgcttctcgattttcccgggttccgggctg
tttaagaagccgccgaagtgggccatggtggcagaactggttgaaaccagccgcctgtgg
ggccgcacggcggggcggattgagccggagtggattgagccgctggcgcagcacctgatc
aagcgcagctacagtgaaccgcactgggagaaatcgcagggcgcggtaatggctgccgag
aaggttacgctctatggcctgccgattgtggccgcccgcaaggtaaactatggcagcatt
gatcccactctgagccgtgagctgtttatccgtcacgcgctggtggagggcgactggcag
acgcgtcacgctttcttccgtgctaaccagaagctgcgcagtgaagtcgaagatctggaa
cacaaatcccgccgtcgcgatattctggtggatgacgaaacgctgtttgctttttatgac
cagcgcattggcaaagaggttgtctcagcgaagcatttcgacagctggtggaaaaaggcc
agccgtgaaaacgcggagctgctgaactttgacaaacagatgctgatcaaaaagggcgcg
gataaggtcagccagcttgattaccctaacttctggcatcagggcaaccttaaactgaag
ctgagttaccagttcgagccgggtgccgatgcggatggcgtgacggtacatattccgctg
ccgctgctgaatcagattgaagatagcggttttgaatggcagatccccggggtacgccgt
gagctgatcatctcgctgattaagtcactgcccaagccgctgcgccgcaacctggtgccg
gcacccaactacgccgaggcgttcctgggacgcgtcaacgcaatggagatgccgcttccc
gatgcgctgtcccgtgagtttcgccgcatgaccggcgtcacgctggagcgggaaaactgg
cagtgggaacaggtgcccgatcatctgaaaatgaccttccgggtggtggatgagcacaac
cgtaaactgctggaaggtaaagatctcaccgcgctcaaggcacagctgaaaggcaaggtg
caggagacgctgtcaaaagtggcagatgacgggctggagcagagcggtctgcatatctgg
agctttggtgaactgccgcgcagctacgaacagaagcgcggtagctatcaggtcaaagcc
tggcctgcgctggtcgatgagaaagagagcgtcgccattcgcctgtttgacagcgagcag
gagcagcagaaaatgatgtggcgcggtcagcgtcgtctgctgctactgaatgtgccgtca
ccggttaaatatctgcacgagaagttgccgaacaaagccaagctcggactttacttcaac
ccttatggcaaagtgctggagctgattgatgactgcatcgcctgtggcatcgacaaactg
atgggtgaagcgggcggtccggcctgggatcagacctcgtttgagcagttgcgtgacaaa
gttcgcggcgaactcaatgagaccgtcgtgaccattgcgaagcaggttgagcagatcctg
acggccgtcttcaacatcaataagcgtctcaaaggccgggtcgatatgacgatggcgttg
gcgttgtccgacatcaaggcgcaattaagtggtctggtttatcgcggctttgtcaccggc
aacggctggcagcgactggcggatacgctgcgttacctgaatggcattgagcggcggctg
gaaaaactgcctgccgatcctcacagcgatcgcgcgcgcatgttaaaagtgcaggcagtg
gaacaggcgtatcaggcgtggcgcaacaaattgccgccgcagcgtcaggatgatgaagag
gtgaagaacattcgctggatgattgaggagctgcgtatcagctactttgctcagcaactg
ggtacgccgtatcccatctcagagaagcgaattctgcagacaatggagcagatagcaggg
taa
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