Pantoea vagans FDAARGOS_160: AL522_21095
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Entry
AL522_21095 CDS
T04302
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pagg
Pantoea vagans FDAARGOS_160
Pathway
pagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL522_21095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagg03019
]
AL522_21095
03016 Transfer RNA biogenesis [BR:
pagg03016
]
AL522_21095
Enzymes [BR:
pagg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AL522_21095
Messenger RNA biogenesis [BR:
pagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AL522_21095
Transfer RNA biogenesis [BR:
pagg03016
]
Prokaryotic type
tRNA degradation factors
AL522_21095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
HTH_20
LexA_DNA_bind
YqfQ
Motif
Other DBs
NCBI-ProteinID:
AMG59928
LinkDB
All DBs
Position
complement(3769470..3771965)
Genome browser
AA seq
831 aa
AA seq
DB search
MSKDPFQDREAEKYENPIPSREFILALLEKREKPASREELAEEMNLHEEEHLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDLYLSAEQMKFCMH
GDVILAQPLGADRKGRREARVVRVQEPRNNQIVGRYFTDAGAGFVVPDDSRLSFDILIPP
EETMNARMGSVVVVELVQRPNRRTKAIGKVAEILGDDMGTSLAVDMALRTHEIPHTWPPE
VEAQVSKLKEEVPEEAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAHQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGKLTGFKHYEAVMNSHARLTYNKVWNILQGDKELRQQYAPLVKDLEELHNLYQVLDAA
REERGGISFETEEAKFIFNAERRIERVERVSRNDAHKLIEECMILANIASARFVEKNQEP
ALFRDHDRPTDESIKSFRTVLNELGLTLPGGNKPQPVDYAALLKQVADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLTLHRAIKYLLAKEQDEGKGLVQRA
IKYLMPKERNVAKDMTTATGGYHYEMPEMLQLGLHCSLTERRADEATRDVADWLKCDFMQ
DQVGNVFNGVISSVTGFGFFVRLSDLFIDGLVHVSTLDNDYYRFDPVGQRLIGESGGRTY
RLGDTVEVRVEAVHMDERKIDFALISSQRQVRGEGKTARDRAKREDNAPAKRRRNVNKKS
NFEPDAAFRGDKGKPAAANTEKKSKNVSEKTRKIAATTRAKRARKKAEPEG
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggatagagaagctgaaaaatacgaaaaccctattccaagc
cgtgaatttattctggctctgttagaaaaacgtgaaaaaccagccagccgtgaagagctg
gctgaagagatgaatctgcacgaagaagagcaccttgaggcgctgcgtcgccgccttcgc
gccatggagcgtgatggtcagctggtgttcacccgccgtcaatgctatgcgctgccagag
cgtcttgatctcctgcgcggtaaagtcattggccatcgtgatggctacggcttcctgcgg
gcagaaggtcagaaagatgacctctacctctctgcagagcagatgaaattctgtatgcac
ggtgacgtaatcctggcgcagccgctgggtgccgatcgcaaaggccgccgcgaagcgcgc
gtggtccgcgtgcaggaaccgcgcaacaatcagatcgttggccgctactttaccgatgcc
ggtgccggcttcgtggtaccggacgatagtcgcctgagttttgatatcctcatcccgcct
gaagagacgatgaatgcccgcatgggttccgtggtggtggttgagctggtccagcgtccg
aaccgccgcaccaaagcgatcggtaaagtggctgagatactgggcgatgatatgggcacc
agtctggccgttgatatggcgctgcgcacccatgaaatcccccacacctggccgccagaa
gtggaagctcaggtcagcaagctgaaagaagaagtcccggaagaggccaaaaaaggccgt
gtcgatctgcgcaaactgccgctggtcaccattgatggtgaagatgcccgtgactttgat
gatgcggtctactgcgagaaaaaacgcggtggcggatggcgtctgtgggtcgctatcgcc
gatgtgagctattacgtccgtccgggtacgccactggatgacgaagcgcatcagcgcggc
acctcagtctacttcccgtcgcaggttgtgccgatgctgccggaagtgctgtcgaatggc
ttatgctcgcttaacccgcaggtcgatcgactctgtatggtgtgcgaaatgaccatttcg
accaaaggtaagctcaccggctttaagcattacgaagcggtaatgaactcccatgcgcgt
ctgacctacaacaaagtctggaacatcctgcagggcgacaaagagctgcgtcagcagtat
gcgccgctggtcaaagatcttgaagagctgcacaacctctaccaggtactggacgctgca
cgtgaagagcgcggcggtatctcgtttgaaacggaagaggcgaagttcatcttcaatgcc
gagcgccgtatcgaacgtgttgagcgcgtgtcacgtaatgacgcccacaagctgatcgaa
gagtgcatgatcctggcgaacatcgcctcagcacgcttcgttgagaaaaatcaggaaccg
gcactgttccgcgatcacgatcgtccgaccgatgagagcatcaagagcttccgtaccgtg
ctcaacgagctgggactgactctgccaggcggcaacaaaccacagcctgtggattatgcg
gcgctgctgaagcaggttgccgatcgtcctgatgcagaaatgctgcaaaccatgctgctg
cgttcaatgaagcaggcggtttacgatccggaaaaccgcggtcactttggtctggcactc
tcatcgtatgcgcactttacttcgccaattcgccgctacccggatctgacgctacaccgc
gccattaaatatctgctggcaaaagagcaggatgaaggtaaaggcctggtacaacgcgcc
atcaaatatctgatgccgaaggagcgcaatgtcgccaaagatatgacgacagcaaccggc
ggctatcactacgagatgccggagatgctgcagctgggtctgcactgttccctgaccgaa
cgtcgcgccgatgaagcaacccgcgacgttgcggactggctcaagtgtgacttcatgcag
gatcaggttggcaacgtcttcaacggcgttatctccagcgtgaccggatttggcttcttt
gtccgcctgagcgatctgttcatcgatggtctggtgcacgtttcaacgctcgacaacgat
tactaccgctttgacccggtaggtcagcgtctgatcggtgaatcaggcggccgcacctat
cgtctgggtgacaccgttgaagtgcgtgtcgaggcggtccatatggacgagcgtaaaatc
gactttgctcttatctccagccagcgtcaggtgcgtggtgaaggtaaaaccgcgcgtgat
cgggctaagcgtgaagacaacgcaccagcaaagcgtcgtcgtaacgtgaacaaaaagtcc
aacttcgagccggatgctgcattccggggtgacaagggcaaacctgccgcggccaatacc
gagaaaaaaagtaaaaacgtctcggaaaaaacccgtaaaatcgccgccaccacccgggcg
aagcgcgccagaaaaaaagctgagcctgaaggctga
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