Planktothrix agardhii: NIES204_06700
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Entry
NIES204_06700 CDS
T05658
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pagh
Planktothrix agardhii
Pathway
pagh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES204_06700 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagh03021
]
NIES204_06700 (rpoC1)
03400 DNA repair and recombination proteins [BR:
pagh03400
]
NIES204_06700 (rpoC1)
Enzymes [BR:
pagh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES204_06700 (rpoC1)
Transcription machinery [BR:
pagh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES204_06700 (rpoC1)
DNA repair and recombination proteins [BR:
pagh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES204_06700 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BBD53397
LinkDB
All DBs
Position
813705..815600
Genome browser
AA seq
631 aa
AA seq
DB search
MAKIEQRFDYVKIGIASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVTHVWYLKGI
PSYMAILLDMPLRDVEQVVYFNAYVVLNPGNYDGLSYKQLLTEDTWLEIEDQIYSEDSTL
TGIEVGIGAEAISRLLEDIPLEEEAERLREEIAVAKGQKRAKLIKRLRVIDNFVATGSKP
DWMVLNVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRN
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLRMHQCGLPREMAIELFQPFVINRLIRQGLVNNIKAAKKLIQRNDASIWEVLQE
VIQGHPVMLNRAPTLHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLSI
ESQAEARLLMLASNNILSPATGRPIVTPSQDMVLGCYYLTAENPKLEDQSHRYFPDLEDV
ILAYKQGALGLHSYIMVRFDGEILSDEVEQIGVELKDDLTGVITKTYVGKKTGKLMRRVR
EDSEGNILAQYIRTTPGRVIFNKTVQDTLIQ
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaattgaacaacgatttgattacgttaaaattggaatcgcatctccagaacgc
attcggcagtggggagaaagaaccctacccaatggtcaagtggttggagaagttacaaaa
cctgaaaccatcaattacagaaccctgaaaccggagatggacgggttgttttgtgaacga
atttttggcccagcaaaggattgggaatgtcattgtgggaaatataaacgggtcagacat
cgtggaattgtctgtgaacgctgcggggtagaggtaacagaatcccgtgtccgtcgtcac
cgtatgggttttattaaactagccgctcctgtaacccatgtttggtatctcaaaggcatt
cctagttatatggctattttattagatatgccattgcgggatgtagaacaggtggtttat
tttaacgcttatgtggtgttaaatccaggtaactatgacggcctatcctataaacagtta
ttaaccgaagatacttggttagaaattgaagaccaaatttatagtgaagattccacctta
accggaattgaagtgggaattggagccgaagccatttcccgtttgctcgaagatattccc
ttagaagaagaagccgaaagattacgggaagaaattgccgttgctaagggacaaaaacgc
gccaaattaattaaacgattgcgggtaattgataattttgtggcgacgggttccaaaccg
gattggatggttttgaatgtaattcccgtcattcctcccgatttacggccaatggtgcag
ttagatgggggtcgatttgccacctccgacttaaacgacctatatcgtcgggtgattaac
cggaataatcggttagcccggttacaggaaattctcgccccagaaattattatccgtaac
gaaaaacggatgttacaggaagccgttgatgccttaattgataacggtcgccgaggtcgg
acagtggtgggggcgaataatcgacccttaaaatccctctccgatattatcgaaggaaaa
caaggacgattccgtcaaaacctattaggaaaacgggtcgattattctggacgttccgtg
attgtggtggggcctaaattaagaatgcaccagtgcggtttaccacgggaaatggcaatt
gaattgttccaaccctttgtaattaaccgcctaattcgtcaaggattagttaacaatatt
aaagcggcgaaaaaactgattcaacggaatgatgccagcatttgggaagtcttacaggaa
gtcattcaaggacatccggtgatgctaaaccgcgccccaaccttgcaccgtttagggatt
caagcctttgaaccgattttagtcgatggtcgggcgattcaactgcatccgttagtttgt
cccgcctttaacgctgactttgacggtgaccaaatggccgttcacgttcccctatcaatt
gaatcccaggctgaagctcggttattaatgttagcttcgaataatattctatccccagca
acgggtagaccgattgttacacctagtcaggatatggtgttgggatgttattatttaacc
gcagaaaaccctaaattagaggatcaaagtcaccgctattttcctgatttagaagatgta
atcttagcctataaacagggcgctttgggtttacattcatacatcatggtgcgatttgat
ggggagattttatcggatgaagtagaacagataggggtcgaacttaaagacgacttaact
ggagtgatcactaaaacttatgtgggcaaaaaaacagggaaactaatgcgacgagttcga
gaagattccgaggggaatattcttgcccaatatattcgtactaccccggggcgtgtcatt
ttcaataaaaccgttcaagataccctaattcaatag
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