Planktothrix agardhii: NIES204_06710
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Entry
NIES204_06710 CDS
T05658
Symbol
rpoC2
Name
(GenBank) RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pagh
Planktothrix agardhii
Pathway
pagh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES204_06710 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagh03021
]
NIES204_06710 (rpoC2)
03400 DNA repair and recombination proteins [BR:
pagh03400
]
NIES204_06710 (rpoC2)
Enzymes [BR:
pagh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES204_06710 (rpoC2)
Transcription machinery [BR:
pagh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES204_06710 (rpoC2)
DNA repair and recombination proteins [BR:
pagh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES204_06710 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
CoV_M
RPN1_C
MethyTransf_Reg
Motif
Other DBs
NCBI-ProteinID:
BBD53398
LinkDB
All DBs
Position
815726..819760
Genome browser
AA seq
1344 aa
AA seq
DB search
MANKKIFRNQVIDKGQLKKIMSWAFMNYGTARTAQIADELKELGFTYATKAGVSISVDDL
QIPPSKKALLEEAEEEIRNTERRYIKGEITEVERFQKVIDTWNGTSEALKDRVVENFKAS
NPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISS
YGARKGLVDTALRTADSGYLTRRLVDVSQDVILREIDCGTSKGIWTRSMTDGERVLIPIK
DRLMGRVLGADVHHPETGEIITYQSEQAVKNHSVSEELAVAIQEAGVEEVLLRSPLTCEA
NRSVCQHCYGWSLAHGHNVNLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTAEAAGMIR
AGINGVVKFSKSLRVRPFRTRHGDDAFIVESTGQIIVDGSGKNTEKHSITQGTTIIVQEG
QQVKANEILAEIAAGGRTARKTTEKATKDVATDLAGEVKFADVVPEEKTDRQGNMTRIAQ
RGGLIWVLGGEVYNLPPAAEPLVKNGDPVHPGSVLAQTKLVSEHGGLVRIREQFAEGELP
REIEIITASVLLDQALVRLVQMQGREQYIIETNSNHRFMLKVSPGSKVENHDVIAELMDD
SYRTKTGGIIKYAGVEVAKRGKGKQGYEVTQGGTLLWIPEECHEVNKDISLLLTEDGQYV
EAGMEVVKDIFCQSNGVIEVTQKNDILREIVIKPGELHLVDDPEMVMAIDGQIVNPGQEV
IPGIISDNLRYVEYVETPEGPALLLRPVVEFSVPENPTVPSQESLNESIVLRAVQRLTYK
DGERVRSVEGVELLRTQLVISIGIEAPQLAADIELLPDENDPDVRKLQLVILESLVIRRD
AIADATQGSTLTRLMVKDGDEIEKGAVVTRTEIMCKEDGIIQGIRSGSEIVRRCLVVRES
DQMTIQLPEGVKPTVKLGQLLVEGIEIAEGVNLSESGQVIAVGNKIVGQGTIPVTGNQIT
MRRGRPYRVSPGAILHIKDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKE
ACILARRPGTAQVTMDDDITELRVIENDGTVTDYPLGSGQSPIVSDGYKVEAGQTLTDGP
SNPHEILEVFYDHYLEQGEGMYDAALGSFRHCQAFLVNEVQSVYQSQGIDISDKHIEVIV
RQMTSKVRIDDGGDTTMLPGELVELRQVEQVNDAMSITGSAPAKYTPVLLGITKASLNTD
SFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNAYEESGNAEYGFD
NGTLYLDEEDEDELRDVVLDDKTARVYNSFERELPPESKAAPSSLGKGSKVIFEDSEDDP
LLSAILDDELIDDEYEDDNEDEDE
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaaaaaaatctttcggaatcaagttattgataaaggacaattaaaaaaaatc
atgtcctgggcttttatgaattatggtacggctcgcaccgcccaaattgccgatgaatta
aaggaattagggtttacttatgccacaaaagccggggtttctattagtgtggatgactta
cagattcctccttccaaaaaagctctattagaagaagcggaagaagaaattagaaataca
gaacgtcgttatattaaaggggaaattaccgaagttgaacggtttcaaaaagttattgat
acttggaatggtacatccgaagccctaaaagatcgggtggtggaaaactttaaagccagt
aaccccctgaactcggtttatatgatggccttctccggtgcgcgggggaatatttcccaa
gtccgtcagttagttggaatgcggggtttgatggctgacccccaaggggaaattattgat
ttaccgattaaaaccaacttccgagaaggcttaaccgttacggagtatattatttcctcc
tatggggcgcgtaaaggtctagtagatacggccctacgaaccgccgactctgggtattta
acccgccgtttagtcgatgtttcccaggatgtgattctgcgagaaattgactgcggaacc
agcaaggggatttggactcgcagtatgaccgatggcgaacgggtgttaattccaatcaaa
gatcggttaatgggtcgggtgttaggggcagatgtccaccaccccgaaaccggagaaatt
atcacctatcagtcagaacaggcggtcaaaaatcattccgtgagtgaggagttggccgta
gctattcaggaagctggagttgaggaggtattattgcgatcgcctctcacctgtgaagcc
aatcgttccgtctgtcaacattgctatggctggagtttagcccatggtcataacgtcaac
cttggggaagcggtgggaattattgccgcccagagtatcggcgaacccggaacccagtta
accatgcggacattccacaccggaggggtattcaccgccgaagccgctggaatgatccgg
gccggaattaatggggtggtcaagttctctaaatccctgcgagtccgtcccttccgtacc
cgtcacggagatgatgccttcatcgtggaaagcacgggccagattattgtggacggtagt
ggaaaaaataccgaaaaacacagtatcacccaaggaacaacgattattgtccaagaaggt
caacaagttaaagctaacgaaatcctagcggaaattgccgccgggggtcggacagcccgc
aaaaccacggaaaaagctactaaggacgtcgccacggacttagctggggaagtcaaattt
gccgatgtggttcccgaagaaaaaaccgaccgtcaagggaacatgacccgtatcgcccaa
cggggggggctgatttgggttctcggaggagaagtttataacctacccccggcggcggaa
ccattggtcaaaaatggtgatccggtgcatccgggaagcgttctcgcccaaaccaaactg
gtttcagagcatgggggattagtccgaattcgggaacagtttgccgaaggtgagctacct
cgggaaattgagattatcaccgcctcggtattactagatcaagccttagtgcggttggta
cagatgcagggacgggaacaatatattattgaaaccaatagtaaccatcgcttcatgctc
aaagtcagtccgggttccaaagtggaaaaccacgatgtgattgcggaactgatggatgat
agctaccggacaaaaaccgggggtattattaaatacgccggggtagaagtcgccaaacgg
ggtaagggaaaacagggttatgaagtcacccagggagggactttattatggattcccgaa
gaatgccatgaggtgaataaagatatttccttactgttaactgaggatggacagtatgtg
gaagctgggatggaagtggttaaggatatcttctgtcagagtaatggggtgattgaagtt
actcagaaaaatgatattctgcgagaaatcgtcatcaaacccggagaactgcatctggtg
gatgacccggaaatggtgatggcaattgatggccagattgtcaatcccggccaagaggtg
attccagggattatctcggacaacttgcgttatgtggaatatgtggaaactcccgaaggc
ccagccttgctgttacgtcccgtggtggagtttagcgttcccgaaaatcccaccgtcccc
tctcaggagtctctgaacgagtccatcgttctgcgagccgtgcaacgtttaacctacaaa
gatggggaacgggtacgctctgtggaaggggtggaactgctacgaacccagttagtaatt
agtattggcatcgaagccccgcagttagccgccgatattgagttacttcccgatgagaat
gaccccgacgtcaggaagttacagttagtgattttagaatccttggtaattcgtcgggat
gcgatcgctgatgcgactcagggcagtaccctgacgcggttaatggtcaaggatggagat
gaaattgagaaaggcgccgttgttactcgcacggaaatcatgtgtaaggaagacgggatt
attcaggggattcggtcggggtcggaaattgtgcgccgttgtttggtggtgcgcgagagt
gaccaaatgaccattcagttacccgaaggcgttaaacctacggtgaaattgggtcaactg
ttggtagaaggaattgaaattgctgaaggggttaacctatcggagtccggtcaagtcatt
gccgttggtaacaaaatcgtgggtcaggggactatcccggtaacgggaaatcagattacc
atgcgtcggggtcggccctatcgggtgtctcccggtgcgattctgcatattaaggatggg
gacttagtacaacggggggataacctggtgttgctggtgtttgaacgggctaaaaccgga
gatattattcaagggttgccccggattgaagaattattagaagcccgtaaacccaaggaa
gcctgtattttagcccgacgcccgggaacggcccaggtgacgatggatgatgacatcacc
gaactgcgggtaattgaaaatgatggcacggttacggattatcccctgggttcgggtcaa
tccccgattgtctccgatggttacaaagtagaggccggacaaaccttgaccgatggccct
agtaatccccatgaaatcctggaagtgttctatgaccattatctggaacagggagaaggg
atgtatgacgcggctttgggtagtttccgccactgtcaagcattcttggttaacgaggta
cagtcggtgtatcagtcccaggggattgatatttccgataagcatattgaggtgattgtc
cgtcagatgacctcgaaggtgcggattgatgatgggggcgatacaactatgttacccggg
gaattagtggaactgcgccaggtagaacaggtgaatgatgcgatgtcgattaccggaagt
gcgcccgccaaatatacccccgtgttattggggattaccaaggcgtccttaaataccgat
agctttatctcggcggctagtttccaagaaactacccgggtcttgactgaagcggctatt
gagggcaaatccgactggttacgcggtctcaaggaaaacgtgattatcggacgtctgatt
ccggcgggaacgggatttaatgcctatgaggaatcgggtaatgccgagtatggctttgat
aatggcacgttgtatttggatgaggaggatgaggacgaactgcgggatgtggttttggat
gataaaaccgcccgggtttataacagttttgaacgggaattacccccggagtccaaagca
gcaccgtctagtttaggaaaaggtagcaaggttatatttgaagatagtgaagatgatcct
ttattatcagctatcctcgatgacgagttaattgatgacgaatacgaagacgacaacgag
gacgaagacgaataa
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