Planktothrix agardhii: NIES204_07620
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Entry
NIES204_07620 CDS
T05658
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pagh
Planktothrix agardhii
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagh03400
]
NIES204_07620
DNA repair and recombination proteins [BR:
pagh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NIES204_07620
Archaeal homologous recombinant proteins
NIES204_07620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_21
AAA_29
Rad50_zn_hook
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
BBD53488
UniProt:
A0A2Z6CAQ2
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All DBs
Position
905030..908140
Genome browser
AA seq
1036 aa
AA seq
DB search
MIPQKLTLKNFLSYREATLDFSGLHTACICGSNGSGKSSLLEAMAWAIWGESRAESKDDI
IYMGELETQVDFIFISQGNLYRVIRNRRRGQSGTLEFQVATTVLQEIEDLDQIKFRTLTE
KGIAPTQQKIIDYLKLDYDTFTNSAYLRQGKADEFMIKRPAERKEILANLLKLDQYDGLS
DKAKDLAKSYKSQAEILEQTLTSNQVQIDQKGQLEQDIIQLQNTIDQLQEKQAQDRDQYQ
QLQAQQHHRQSWEKLLTGQQQQHQTFAQDYRRLQQELVTTQQQRQELEAVLKQETEIQTG
YNNFITLQTTEETLSVQFKIYQDSQQQRQQLQEQQRQHLNTLQQQIQSLQARLEALTQQE
QDYLQILSQKTDIEAGLEQLQTARNRLTQFDQLQLEVTPILQQRQRLQTELDRAQSRQQA
RLDELKTSVGKLQRTIKHHRPQLEQQSQTIVNKIIELDKKKVYQIRVREKGQERHNFIDR
LNTVKRDYEEKLVELDQKIKLLSKSESEETETAELPLLRSQFPPCPLCDRPLDEHHWNLV
ISKQQNQQQEFRNEIWMIHEQLVVADREIKILQEEYRQIQEDLLPYEELREHRGKIQAQL
EGLDQDEQQLQQLILEEKAVQNILDTGNYATDLYAELQDLEHKLSQLNYNEQSHALARNE
EKRWRWAEIKYSQIRDAQDKLTKINTQKPELETKIQSLTQSLTEEKNNSKIQQKIIILEQ
KINQMGYNVEEHNRIRTELRQAQIWLTRTEQLNQAKQQYPILQKRLQELETITQERVKNL
QAIQGQIELLQEQLKETPDPTESLKQLEQLIQQQRLKLDHYLGQFGSLQQQQTQLDNLNA
QQIEIKTQLDTTRRQYRVYDELAKAFGKNGIQALMIENVLPQLEAETNQILSRLSSNQLH
VQFVTQRTSGRGSKSSKNAPKMIETLEILIADARGTRSYETYSGGEAFRINFAIRLALAK
LLAQRAGTSLQMLIIDEGFGTQDAEGCDRLIAAINAIASDFACILTVTHIPSLKEAFQAR
IEVNKTSQGSQIYLSI
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgattccccaaaaactgaccctaaaaaatttcctgagttatcgagaagcgaccctagat
tttagtggattacataccgcttgtatttgcggttccaacgggtcaggaaagtcatcttta
ttagaagcaatggcttgggcaatttggggggaaagtcgggcagaatcgaaggatgatatt
atctatatgggagaattagaaacccaggtcgattttatatttattagtcagggaaactta
tatcgggtgattcgtaaccgccgccgtggtcaatcgggaaccttagaatttcaagtagca
accaccgttttacaagaaattgaagatttagatcaaattaagtttcgcacccttacagaa
aagggaatagcccccactcaacagaaaattatagactacttaaaactagattatgatacc
tttactaattccgcctatttgcgtcagggaaaagccgatgaatttatgatcaaacgtccc
gccgaacgtaaagaaattctggctaatttattaaaattagatcaatatgatggcttatca
gataaagccaaagacttagccaaaagttataaatcccaagcggaaattttagaacaaacc
ttaaccagtaatcaagtccaaatcgaccaaaaaggtcaactggaacaggatattattcaa
ctacaaaataccattgatcagcttcaggaaaaacaagcccaagatcgagatcaatatcaa
caactacaagcccaacaacatcatcgtcaatcttgggaaaagttattaacaggacaacaa
caacagcatcaaacctttgctcaagactatcgcagattacaacaggaattagttactact
caacagcaacgtcaagaattagaagcagtattaaaacaagaaacggaaattcaaaccgga
tataataattttatcaccctacaaaccaccgaagaaaccctatcggttcaatttaaaatc
tatcaagattcccaacaacaacgccaacaattacaagaacaacaacgccaacatctaaac
accttacaacagcaaattcaaagtctacaagctcgtttagaagcgttaacccaacaggaa
caagattacttacaaattttaagccaaaaaactgatattgaagcgggattagaacagtta
caaaccgctcgtaatcgtttgactcagtttgatcaattacaattagaagttactcccatt
ttacaacagcgtcaacgcttacaaacggaattagatcgggctcaatctcgtcaacaagca
cggttagacgaattaaaaacctccgtcggaaaattgcaacgtactatcaaacatcatcgc
ccccaattagaacaacaatcacaaactattgttaataaaattattgaactggataagaaa
aaagtttatcaaatacgagttcgagaaaaaggacaggagcgccataattttattgaccgt
ttgaatacggttaaacgggattatgaagaaaaattagtcgaactagatcagaagatcaaa
ctattatcaaaatcggaatccgaggaaacagaaaccgccgaattaccgttattgcgatcg
cagtttcccccttgtcctctttgcgatcgccccctagacgaacatcactggaatttagtt
atttctaaacagcaaaatcaacaacaggaattcagaaatgaaatttggatgatccatgaa
cagttagtagttgcggatcgagaaattaagattttacaggaagaatatcgacaaattcaa
gaggatttattaccctatgaagaattgcgagaacaccgaggaaaaatccaagctcagtta
gaaggattagatcaagatgaacagcaattacaacaattaattttagaagaaaaagccgtt
caaaatattttagatacgggtaattatgcaacggatttatatgcagaattacaggatcta
gagcataaattaagccaactcaattataatgaacaaagccatgcgttagctaggaatgaa
gaaaaacggtggcgttgggcggaaattaaatatagtcaaattcgagatgctcaagacaaa
ttaaccaaaattaatactcaaaaaccagaattagaaaccaaaattcaatccttaacccaa
agtttaactgaagaaaaaaacaactctaaaattcaacaaaaaattataattttagagcaa
aaaattaaccaaatgggttataatgttgaggagcataatcgcatccgtacagaattgcgt
caagctcaaatttggttaactagaaccgaacaattaaaccaagccaaacaacaatatcct
atcctgcaaaaacgccttcaagagttagaaaccatcacccaagaacgggtaaaaaaccta
caagcaatccaaggacaaattgaactattacaagaacaattaaaagaaactcccgacccg
acagaatcattaaaacaattagagcaattaattcaacaacaacgactaaaattagatcat
tatttaggacaatttggcagtttacaacaacaacaaactcaattagataatttaaacgct
caacaaatcgaaattaaaacccaattagataccacccgccgtcaatatcgagtttacgat
gaattagcaaaagcctttggtaaaaatggaattcaagccctaatgattgagaatgtttta
ccccaattagaagcagaaaccaatcaaattttatctcgattatcctcaaatcaactccat
gttcaatttgttacccaacgtactagcggacggggtagtaaatcctcaaaaaatgctcct
aaaatgattgaaaccttagaaattctaatcgcagatgcgcggggaactcgctcctatgaa
acctattctggaggggaagcctttagaattaattttgccattcggttagccttagcaaaa
ctattagcacaacgggcgggaacttctctacaaatgttaattattgatgagggatttgga
actcaagacgctgaaggttgcgatcgtttaattgcggctattaatgcgatcgcttctgat
tttgcttgtattttgactgtcacccatattcctagtttaaaagaagcttttcaagctaga
attgaagttaataaaactagccaaggttctcaaatttatctctcaatttaa
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