Planktothrix agardhii: NIES204_10220
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Entry
NIES204_10220 CDS
T05658
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pagh
Planktothrix agardhii
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pagh03016
]
NIES204_10220
Enzymes [BR:
pagh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NIES204_10220
Transfer RNA biogenesis [BR:
pagh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NIES204_10220
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BBD53746
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All DBs
Position
complement(1250795..1252804)
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AA seq
669 aa
AA seq
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MEKGTLIELRLHGERRLAVMDRPEGKKHWVVIDENLLAHTIHPRQIAYEVTGATYKPVDI
RAFTKELQPYLDPSSLEVAWEILVEQGETVDPKEMALLLFSEQSPPQCYASYVLLSNDKL
YFKQKGERYEPRSPGQVAEIKHQQDVEQQKQRDVQEYWLRVQNRLAGVVVEWRNSDRTRL
DALERLALHGEDASHVAPALETLATLERSQTPQAALQLLVDLGIWGLHENLSLRRSQIPT
QFSTQVLEVARRCLDSPPPDPDSDRLDLTHLKVYTIDDESTREIDDGLSLEVLEDGRRRI
WIHIADPTRLLSPGDELDLEARRRTTTVYLPTGMVPMFPSELATGPMSLIQGQVCCALSF
GVILDETGGVKDYSIHVSNIKPTYRLTYDDVDEMLQIGIQGEPEIDALSLWAKRRKEWRN
ANGAISIYMPESVIKVNGEEISITVVEDSPSRQMVAEMMILTGEVAARYGQTHNLPLPYR
SQPQPELPPEEELMQLPPGAVRACTMRRYMPRSEVGLTPSRHASLALETYTQVTSPIRRY
SDLLAHFQIKAHLRGEASPFSIEDMQAIVMSLGPAVKEASKVERETNRYWSLEFLRRNSD
EIWQATMLRWLREDLGLVFLEELALELPMRFSRSVEVGEQFEVKVSHVDPHKDMIQFQEI
IGSTASSAI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaagggtactctgattgagcttagattacacggggagcgtcgtcttgccgtgatg
gatcgacctgaaggaaaaaaacactgggtcgttattgatgaaaacctcctagctcataca
attcacccgcggcaaattgcttatgaggtaacgggggctacatacaaacctgtggatatc
cgggcttttactaaagaattgcagccttatcttgatccgtcaagtttggaggtggcttgg
gaaattttagtggagcaaggagaaaccgtagacccgaaagaaatggctctgcttttgttt
tctgagcagagtccgcctcagtgttatgccagttatgtcttgttatcaaatgataaactc
tacttcaaacagaagggtgaacgctacgaacctcgctctcctggacaggtggctgaaatc
aaacatcaacaggacgttgaacaacagaagcaacgggacgttcaagaatattggttgcga
gtgcaaaatagactagcgggggtcgtggtagaatggcgaaatagtgatcgcacccgtttg
gatgcgttagagcgtttggcgctgcatggagaagatgcctcccatgtcgcacctgcttta
gaaactttggcaaccttggaacgttctcaaacaccccaagctgcgttgcagttgttagta
gacttagggatatggggtctgcatgaaaacctatccctacgtcggagtcaaattcccacc
caattctcaactcaagtgcttgaagtggctcgacgttgcttagattctcccccgcccgat
ccggattctgatcgcctagatctaactcatcttaaggtctatacgattgatgatgagagt
acccgtgagattgatgatggtttgagtttagaggttttggaggatggacgaagacggatt
tggattcatattgctgatccaactcgtttgctttctcctggagatgaactagacttagaa
gcccgccgccggacaacaacagtttatctcccgaccggaatggttccgatgttcccctcg
gaattggcaactgggccgatgagtctaattcaaggccaagtctgttgtgctttgagtttt
ggtgtgattttggatgaaacgggtggggtaaaggattatagtattcatgtcagtaatatt
aaaccgacctatcgcctcacttatgatgatgtggatgagatgttgcaaattggcatccaa
ggggaaccggaaattgatgctttgtcgctgtgggctaaacgccgtaaggaatggcgaaat
gcgaacggggcaattagtatttatatgcccgagtcggtgattaaggtgaacggggaagaa
ataagtattacggttgtagaggattctccgtctcgccaaatggtggcggaaatgatgatt
ttaactggagaagtggcggctcgttatggtcaaacccataatttaccgttgccttatcgg
agtcaaccccaaccggaattaccaccggaggaggaattgatgcagctaccaccaggggcg
gtgagagcttgtactatgcggcgttatatgcctcgtagtgaggtgggtttgactccttcg
cgccatgcgagtttggctttagagacttatacccaggtgacatcgccgattcgtcgttat
agtgatttattagctcattttcaaattaaagcccatctgcgaggtgaagcctcacctttt
tctatagaagatatgcaggctattgtgatgagtttagggccggcggtgaaggaagcgtcc
aaagtagaacgggaaacgaatcgttattggagtttggagtttttgcgccggaatagcgat
gaaatttggcaagccacaatgttgcgatggctgcgggaagatttagggttagtcttttta
gaggagttagctttagagttaccgatgcgatttagtcgttctgtagaagttggagaacag
tttgaagtgaaggtaagtcatgttgatccccataaggatatgattcaatttcaggagatt
attggttctactgcttcatctgctatatag
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