Planktothrix agardhii: NIES204_15030
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Entry
NIES204_15030 CDS
T05658
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pagh
Planktothrix agardhii
Pathway
pagh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES204_15030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagh03019
]
NIES204_15030
03009 Ribosome biogenesis [BR:
pagh03009
]
NIES204_15030
Enzymes [BR:
pagh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES204_15030
Messenger RNA biogenesis [BR:
pagh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES204_15030
Ribosome biogenesis [BR:
pagh03009
]
Prokaryotic type
rRNA helicases
NIES204_15030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
UvrD-helicase
AAA_19
HEM4
Cas3-like_C_2
AAA_22
Flavi_DEAD
Tla3_C
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BBD54214
LinkDB
All DBs
Position
1777630..1779036
Genome browser
AA seq
468 aa
AA seq
DB search
MSPSFASLGISEERASYLETIGFSEPTTIQVEAIPHILSGRDVVGLAQTGTGKTAAFSLP
ILEQLDTSAKGVQALILTPTRELAMQVKEAIRKMTDDRSLYILTVYGGQSIERQIQRLQQ
GVQIVVGTPGRILDLLNRGNLKFDRIKWLVLDEADEMLSMGFIQDVEKILESVAEDRQTA
FFSATMEPSIWKLVKKFLKNPVTIKAENPKATPKRIEQRAYMAPRGWSKARALQPILELE
DPESAIIFVRTKQAAAELTTFLQAAGHSVDEYHGNLNQTQRERLLQRFRRRQVRWIVATD
IAARGLDVDHLSHVINYDLPDNAESYVHRIGRTGRAGREGIAITLIQPIDRRKLRLIERH
LNHNFTVLSVPKRSQIEGRYIERLQGRVQEALTGERVASFLPIVAQLSEEYDPQAIAAAA
LQLAYDQTRPSWLDSEFPAEEEEMPLPSSKPKLNRRVVPRPSVSQGVE
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagtccatcttttgcaagcttaggaatttccgaagaacgtgctagttatctggaaaca
ataggctttagcgagccaaccaccattcaagtcgaagcaattccccatattttgtctgga
cgggacgtggtgggactggctcaaaccgggacgggcaaaacagccgccttttcattgccc
attctggagcaactggatacaagtgcaaagggcgtacaagcgttaatcctgaccccaact
cgggagttagccatgcaggttaaagaagcgattcggaaaatgaccgatgatcgcagcttg
tatattttaaccgtttatggcggtcagtcgattgaacgacaaatccaacggttacaacag
ggcgtgcagattgttgttggcacacctggacggattttagatttactcaaccgggggaat
ctgaaatttgaccggattaagtggttagtgttggatgaagccgatgaaatgttaagcatg
ggctttattcaggatgtagaaaaaattctggaatccgttgctgaagatcggcaaacggcg
tttttctcggctacgatggagccttcgatttggaaactggtgaagaaattcctcaaaaat
ccagtcaccattaaagctgaaaaccccaaagctacccccaaacgcattgaacagcgtgct
tatatggctccccgtgggtggtcaaaagcccgggcgttgcaaccgattttagaattagaa
gatccagaatcagcgattatttttgtccgcaccaaacaagctgctgcggagttaaccact
ttcctgcaagccgcaggtcacagtgttgacgaatatcatggaaatttgaaccaaacccaa
cgagaacggctgttgcaacgattccgtcgccgtcaggtgcgttggatcgtggccacggat
atcgctgcccggggcttagatgtggatcatctcagtcacgtgattaactacgatttacca
gataacgcggagagttatgttcaccggattggtcgtacaggtcgcgccggacgcgaagga
attgcgattaccctgattcaaccgattgatcgccggaaactgcggttaattgagcgccat
ttgaatcataactttacggtgttgtcagttcctaagcgatcgcaaattgaaggccgttat
attgaacgacttcaaggacgagtgcaggaagccttaacgggtgaacgagttgcctctttc
ttaccgattgtggcccaattgagtgaggaatacgatccccaagcgatcgcggcggcggct
ttacaattagcctacgatcaaactcgccccagttggttagattccgaattcccggctgag
gaagaagaaatgccactcccgtcttctaaaccgaaattaaatcgtcgggtggttcctcgt
ccttcggtgtcccagggcgttgaatag
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