Planktothrix agardhii: NIES204_27220
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Entry
NIES204_27220 CDS
T05658
Symbol
sigB
Name
(GenBank) group 2 RNA polymerase sigma factor SigB
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
pagh
Planktothrix agardhii
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagh03021
]
NIES204_27220 (sigB)
Transcription machinery [BR:
pagh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIES204_27220 (sigB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
BBD55414
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Position
3055941..3056939
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AA seq
332 aa
AA seq
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MPTVNTTYKEQVASRSTRPATTDAVRTYLHEIGRVPLLTREQEITYGKQVQTMMQQLEAK
NTLAEQLGREPSQQEWSDAVEMSQDELQTILKQGRRAKGKMIEANLRLVVSIAKKYQKRN
MEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQTSRTIRLPIHITE
KLNKIKKVQRELVQKLGRNATPGEIAQALELDPAQIRDYLLASRHPVSLDLRVGDNQDTE
LQDLLEDHNTSADAFVTQELLRQDLKNLLADLTAQQREVITLRYGLEDGKEMSLSKVGVQ
MSISRERVRQLESQALSHLRRRKAQVREYLAS
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgccaactgtcaatactacatacaaagagcaagtggcttccagaagcactcgacctgca
actaccgacgcagttcgtacctatttgcatgaaattgggcgcgttcccttactgacccga
gaacaggagattacctacggtaagcaggtacagaccatgatgcaacagttggaagcgaaa
aatactctcgcagaacaactgggtcgggaaccgagtcagcaagagtggtctgatgcggta
gaaatgagtcaagatgaacttcaaaccatcttgaagcaaggacgtcgggctaagggaaaa
atgatcgaggccaacctgcgtttagtggtctccattgctaagaaatatcaaaaacgcaac
atggaatttttggatttaatccaagaaggaaccctgggtttagaacggggtgtggaaaaa
tttgatcccatgcggggatataaattctcgacctatgcttactggtggattcgtcaagct
attacccgcgccattgcccaaacttctcgcaccattcgtctgccgatccatattaccgaa
aaactgaacaaaattaaaaaagttcaacgggagttagtacagaaattaggccgcaacgcc
actccgggggagattgctcaggcgttagagttagacccggctcaaattcgggattatctg
ttggcgtctcgtcatccggtttctttggatttgcgggtgggggataatcaagatacggaa
ttgcaagatctcctcgaagatcataatacctccgccgatgcttttgtcacccaagagtta
ctgcgtcaggacttgaaaaatttactggcggacttaacagcccaacaacgggaagttatt
accctgcgctacgggttggaagatggtaaggagatgtccctgtctaaagtgggggtgcaa
atgagcatcagtcgtgaacgggttcgtcaactggaaagccaagcgttgagccacctgcgc
cgtcgtaaagctcaagttcgagaatatttagctagttag
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