Planktothrix agardhii: NIES204_30720
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Entry
NIES204_30720 CDS
T05658
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pagh
Planktothrix agardhii
Pathway
pagh03410
Base excision repair
pagh03430
Mismatch repair
pagh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES204_30720
03430 Mismatch repair
NIES204_30720
03440 Homologous recombination
NIES204_30720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagh03400
]
NIES204_30720
DNA repair and recombination proteins [BR:
pagh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES204_30720
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES204_30720
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES204_30720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
BBD55755
LinkDB
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Position
complement(3469233..3471605)
Genome browser
AA seq
790 aa
AA seq
DB search
MWQIQPNLDTPDWIIPIIQEYAPQISGKYVAQLLLHRGIQTPQQLLGFLNYNCYQPSSPF
EFGIEMERAIERLILARNQQEIITIWGDFDADGITATSVLWDGLGQFFNQENQQLSYYIP
NRLTESHGLNCAGIDQLYQQGCQLIVTCDTGSTNLKEIEYANQLGIDIIVTDHHTLLEER
PPVVAIINPRYLSLDHPLYHLSGVAVAYKLIEALYETLPDIPQRPLEDLLDLVAIGLIAD
LVQLKGDCRYLAQLGIKKLQQQLKNPTRPGVAKLLDLCKRTGDRPTDISFGLGPRINAVS
RIYGDAKFCVELLTSKDKKRCQELAIETELANTRRKGLQKEVSHDVMKKLKKIDLSTTQV
IVLSDPQWQGGVLGLVAGQIAQEYGRPTILLSTEGSIDLSNYQQEISDNSEVKLARGSAR
SVNQIDLYELVKSQAHLLHRFGGHPFAAGLSLPIKNIPIFIDAINRQMREKLESDLSDIG
QRNIQVDLVCTVAELGFDLFQELKLLEPCGMGNPVPKILIKNCWFTNAWNTSEKDLRGKK
VQYIKTTFELWDQSISTGFPGVWWGHYKDELPEGILDVIVELDFNTFKEQYEIRILELRF
AQDQNPPASINLANHPILDYRNQNFNQPLSDHLLILNDCPTCWEDLQSWFRRAHTEKRPL
VIAYTLPELLPPEKIWEQLIGIAKYLSRTHQPVTIQQLRNQLNLGVIPLKIGFKILQQLG
FDIEYQDQKLDISWEKLSSFYASETLNQLIQNFLDTIQEEQFRRRYFCKIPLSTLESIAI
QTIIKEGNKN
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaaattcaaccaaatttagatactcctgattggattatcccaattattcaagag
tacgctcctcaaatttcagggaaatatgtggctcaattattattacatagaggtatacaa
acccctcaacaattgctagggtttttaaactataattgttatcaaccatctagtccattt
gaatttggaatagagatggaaagggcaattgagcgattaattttagcccgaaatcaacaa
gaaattatcacaatttggggggactttgatgccgatggaattaccgcaacttccgtatta
tgggatggattaggacagttttttaaccaagaaaatcagcagttatcctattatataccc
aatcgtttaaccgaatctcatggattaaattgtgctggaattgatcaattatatcaacag
ggatgtcagttaatagttacttgcgataccggaagtaccaacttaaaagaaattgaatat
gcgaatcaattaggcattgatattattgttaccgatcatcatactttacttgaagaaaga
cctccagtagttgctattattaatccccgttatttatctttagatcatcctttatatcat
ctatcgggggtggcggttgcttataaattaattgaagcattatatgaaactttgcccgat
attccccaacgtcccttagaagatttattggatttagtcgccattggtttaattgctgat
ttagttcaacttaaaggagattgtcgctatttagctcaattaggaataaaaaaattacaa
caacaattaaaaaatcctacccgtccaggggttgccaaactgttagatttatgcaaacga
acaggcgatcgtcctaccgatatttcctttggtcttggccctcgaattaatgccgtgagt
cgcatttatggggatgctaaattctgtgttgaacttctaaccagcaaggataaaaaacgc
tgtcaagaattagcgatagaaaccgaattagctaatacccggcgcaaaggattacaaaaa
gaagttagtcacgatgtgatgaaaaaattaaaaaaaattgacctatctacaactcaagtt
attgtgttatctgatccgcaatggcaaggaggagttttgggtttagtggcgggtcaaata
gctcaagagtatggacgaccgaccattttattaagtacagaaggaagcatagatttaagc
aattatcagcaggaaattagcgataattcagaagtaaaattagccaggggttctgctcgt
tcagtgaatcaaattgacttatatgaattagtcaaaagtcaagcccatcttttgcatcgt
tttgggggtcatcccttcgccgctgggttgagtttgccaataaaaaatattccgatattt
atagatgcaattaatcgccaaatgcgagaaaaattagaatctgatttgtcggacattgga
caacgaaatattcaagttgatttagtttgtaccgttgccgaattagggtttgatttattt
caggaattaaaactattagaaccctgtggtatgggaaacccagttcctaaaatattaatt
aaaaattgttggtttactaatgcttggaatacttcagaaaaggatttaagagggaaaaaa
gttcaatatattaaaaccacctttgaactatgggatcagtctatatcaactggatttcct
ggggtatggtggggacattataaagatgagctacccgaaggaatattagatgtgattgta
gaactcgattttaatacctttaaagaacaatatgaaattagaatcttagaattacgtttt
gctcaagatcagaatcctccagcctctattaatcttgctaaccatcctattttagattat
cgtaatcaaaactttaatcaacctttatctgatcacttattaattctcaatgactgtccc
acctgttgggaagatttacaatcttggtttcgccgcgcccatactgaaaaaagaccttta
gtgatcgcttataccctacccgaattattaccgcctgaaaaaatttgggaacaactgatc
ggtattgccaaatatctcagtcgcacccatcaacccgtgactattcaacaactccgaaat
caattaaacttaggagtaattcccttaaaaattggttttaaaatcttgcaacaattagga
tttgatattgaatatcaggatcaaaagttagatattagctgggaaaaattatccagtttt
tatgcttctgaaaccctgaatcaattaatccaaaacttcctagataccatccaagaagaa
cagtttcgccgtcgatatttctgtaaaattcccttgtcaaccctcgaatcaatcgcgatt
caaaccatcatcaaggaaggtaacaaaaactga
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