Planktothrix agardhii: NIES204_36190
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Entry
NIES204_36190 CDS
T05658
Name
(GenBank) RNA polymerase, sigma 28 subunit
KO
K03086
RNA polymerase primary sigma factor
Organism
pagh
Planktothrix agardhii
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NIES204_36190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagh03021
]
NIES204_36190
Transcription machinery [BR:
pagh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIES204_36190
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_Crp_2
GerE
RelB
Motif
Other DBs
NCBI-ProteinID:
BBD56292
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Position
complement(4021748..4022746)
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AA seq
332 aa
AA seq
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MNPQNATFFPIIEATASGDDAIAALFKRMARYPLLKPDEEIELARHIQSLVKIEAQQTQL
TLELGRLPTPPELATLVGVTETELKHRLQSGNAAKNRMISSNLRLVVSIAKRYINRGVPL
LDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHIVEQLN
KMKLTYRDLKQSLRRKPTQAELAEAMGITPEQVILLEQVHRKSLSLNHRIGSEETSELMD
ILEDQETQTPEAQMNEMMMRQDLLEVLGTVLTEREKDVLALRFGLVTGVPYTLEEVSAVY
NLSRERVRQIQARAMRKLRRPNVAERLKGWIR
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgaatccacagaatgccacatttttcccgattatagaagcgactgcatctggagatgac
gccatcgccgcactgtttaaacggatggcgcgttatcctttactcaaacccgatgaagaa
atcgaactcgctcgtcatattcaaagtttagttaaaatcgaagcccaacaaactcaactt
accctggaattaggacgtttacctactcccccagaactcgcaactttagtgggagtaact
gaaacagaactaaaacatcgtttacaatcaggaaatgctgcaaaaaaccggatgattagt
tctaatttacggttagtcgtatctattgctaaacgttatattaatcgaggagttccatta
ttagatttaattcaagaaggagccttgggactcaaccgtgccaccgaaaaatttgatccc
gataaaggctataaattctcgacctacgcctattggtggattcgtcaaggaattacccgc
acaattgctaatcaagggagaacaattcgcttacctgttcatattgttgaacagttgaat
aaaatgaagttaacctatcgagatttaaagcaatcgctccgtcgaaaacccacccaagca
gaactagcggaggcgatgggaattacccccgaacaagtgattttactcgaacaagttcac
cgtaaatccctatctttaaatcatcgaattggttctgaagaaacctcggaattaatggat
attttagaagatcaagaaacccaaacccctgaagctcaaatgaatgaaatgatgatgcga
caggatttattagaggttttaggaacagttttaactgaacgggaaaaagatgttttagcc
ctgcgttttggattagttacaggcgttccttacaccttagaagaagtcagtgcagtctat
aatttatcccgggaacgagttcgacaaattcaagcccgagccatgcgaaaattacgccgt
cctaatgttgctgaacgcttaaaaggttggataagataa
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