Planktothrix agardhii: NIES204_38850
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Entry
NIES204_38850 CDS
T05658
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pagh
Planktothrix agardhii
Pathway
pagh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES204_38850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagh03019
]
NIES204_38850
03400 DNA repair and recombination proteins [BR:
pagh03400
]
NIES204_38850
Enzymes [BR:
pagh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES204_38850
Messenger RNA biogenesis [BR:
pagh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES204_38850
DNA repair and recombination proteins [BR:
pagh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES204_38850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_38
HHH
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
BBD56555
LinkDB
All DBs
Position
4288553..4290739
Genome browser
AA seq
728 aa
AA seq
DB search
MSGLISTPFAQPQSLEQSLKHFFGYDSFRPGQREIIDQALQKRDLLIIMPTGGGKSLCFQ
LPALLKPGLMIVVSPLIALMQDQVEALQDNGVGATFLNSTLTAAEAKSRETAILKGDIKL
LYVAPERLLSERFLFFLDTLEEQLGISAFAIDEAHCVSEWGHDFRPEYRKLKQLRIRYPK
IPVVALTATATQRVRQDIIQQLELKNPYIHVASFNRTNLYYEVIPKKKQTFTQLLKIIQE
VGGSGIIYCLSRKNVEDLAFRLQNHGISALPYHAGLEDQIRSENQTRFIRDDVQIMVATV
AFGMGINKPDVRFVIHYSLPRTLESYYQESGRAGRDGESARCTLFFSYGDIKTIEYLIEQ
KPDPDEQRIARQQLRQMLDYAEASECRRTVQLSYFGEFFSENCAKCDNCQTQNPVEDWTI
EAMKFLSCIARCHERFGMNYIIDVLRGSKSQKILDRRHDQLSTYGIGKDKTAEEWKNLGR
SLLRQGLLDQTTDGYAILKLNSRSWEVMKRERTVEITVIKEQNVEKSTRSLAIEAEMLFE
QLRQLRKKLADEQSIPPYMVFSDSTLKLMAQQRPQNLEELSQISGVGSYKLERYGKEFTE
AIFTYCHGQNLPTSRSKKSESKRLTLEDLSDSLIMTLSLYQDGLSLNAIANERGLKTSTI
ADHLTQLIAANQNINIDQFVEPERQQNIIQAIEKVGDISLKTIYECLGENYNYEEIKMVR
EYWRQHPN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggctaatttctactcccttcgcccaaccccaatccctagaacagtctcttaaa
catttttttggttatgattcctttcgacccggacagcgcgaaataattgaccaggcgcta
caaaagcgagatttattaattattatgcccaccggaggcggaaagtctctgtgttttcaa
cttccggctttattaaaacctggattaatgattgttgtgtcccctttaattgccttaatg
caagatcaagtggaggcattacaagataatggagttggtgctacctttctcaatagtacc
ttaacggctgcggaagcaaaatcgcgggaaacggcaattttaaaaggagatattaaactg
ctttatgttgccccagaacgattattatccgaacgatttttattttttttagacacccta
gaagaacagttgggaatctctgcttttgccattgatgaagcccattgtgtttctgaatgg
gggcatgattttcggccggaatatcgaaaattaaaacaactgcgaattcgttatcctaaa
attccagttgtagcgttaacagcaacggcaactcaacgagttcgccaggatattattcaa
cagttagagttaaaaaatccctatattcatgttgctagttttaatcgtactaatttatat
tatgaagtaattcccaagaaaaaacaaacctttacccagctattaaaaattattcaggag
gtgggaggttcgggaattatctattgtttaagtcgaaaaaacgtagaagacttggcattc
cgattacaaaatcatgggatttcagccctaccctatcacgccggacttgaagatcaaatc
cggtcagaaaatcagactcggtttattcgagatgatgttcaaattatggtggcgacggtt
gcctttggcatgggaattaataagcccgatgtacgctttgtaattcattatagtttaccc
cgaaccttagaaagttattatcaagaatccggtcgggcgggacgggatggagaatcggct
agatgtacattattttttagttatggtgatattaaaaccattgaatatttaattgaacaa
aaacccgatcccgatgaacaacgcatcgcccgtcaacagttaagacaaatgttagattat
gccgaagcatcggaatgtcggcgcaccgttcaattgagttattttggtgaatttttctcg
gaaaattgtgcaaaatgtgataattgtcagacacaaaatccggtggaagattggacaatt
gaagcgatgaaatttttatcttgtattgcccgatgtcatgaaagatttggcatgaattat
attattgatgtattaagaggatcgaaaagtcaaaaaattctggatcgacgtcatgatcaa
ctttctacttatggtattggtaaggacaaaacggcggaagaatggaagaatttaggccga
tctcttttacgtcaaggactcttggatcaaaccactgatggttatgctattttaaagtta
aattcccgcagttgggaagtgatgaaacgggaaagaaccgttgaaattactgtgattaaa
gaacaaaatgtcgaaaaatcgactcgttctttagcaatagaagcggaaatgttatttgaa
cagttgcgccaacttcggaaaaaattagccgatgaacaatctattcctccctatatggtt
ttttccgattctacgttaaaattaatggcacaacaacgaccccaaaatttagaagaatta
agtcaaatttctggagtcgggagttataaattagaacgttatggtaaagaatttactgaa
gctatttttacctattgtcatggacaaaacttgcctacttctcgatctaaaaaatcagaa
tctaaacgtctaaccctagaagatttatccgatagtttaatcatgactttatctttatat
caagacggtctgagtttgaatgcgatcgccaatgaacgcggattaaaaaccagtaccatt
gccgatcatttaacccaattaattgccgccaatcagaatataaatattgatcaatttgtt
gaacctgaacggcaacaaaatattattcaagccatcgaaaaagttggagatatcagctta
aaaacaatttatgaatgtttgggagaaaactataattatgaagaaataaaaatggttaga
gaatactggcgacagcatcctaattaa
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