Pseudaeromonas aegiceratis: ABHF91_01955
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Entry
ABHF91_01955 CDS
T10906
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pagi Pseudaeromonas aegiceratis
Brite
KEGG Orthology (KO) [BR:
pagi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pagi03016
]
ABHF91_01955
Enzymes [BR:
pagi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABHF91_01955
Transfer RNA biogenesis [BR:
pagi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ABHF91_01955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
XLW41262
LinkDB
All DBs
Position
complement(395489..397540)
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AA seq
683 aa
AA seq
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MFQDNPLLAQLKQQLRENLPKKEGVVRASDRGFGFLETDNRESYFIPPMQMKKVMHGDRI
SAVIRTEREKEQAEPDALITPFLTRFVGRIKLIKDRLNVVPDHPVLKEMIRARAIKGLDE
KQFQEGDWVVARLKRHAMTDGNHAAEISELICRGEDPEAPWWVVLRRHDLARQAPDEAES
WSYHEEGLPREDLTALPFVTIDGASTKDMDDALYAEPAGDGWKLWVAIADPTAYLEAGSP
LDLEAAKRAFTVYLPGRNIPMIPRTLSDELCSLKEGEERPVLCCQLDIAADGALGQFRFF
AANIRSQGRLIYDQVSDYLEQGQSAEFTPNEVIAGQLKLLQGITLARQAWRTEHALMFKD
RPDYAFELNEAGEVVAIHVEPRRLANRMVEEAMIAANICAGQFLTQTPGYGIFNVHAGFD
PEKLSGAMELLTLHNAPWHDESINTLPGFCQLRRWMDAQPTPYLDSRIRRFQTYSVMSAL
PGPHFGLGLPAYATWTSPIRKYGDMVNHRIIKALLAGTPVPACPEEPLTQILTDARRLNR
LAERDIADWLYVRFLAPAVATGQVFPAEIIDIVRGGIKVRLQDNGAVAFVPAGQICRDKK
RLECSWDDGQVRLDKQPLFELGQQVEVVLKDAIEATRSLVATLAQPVDITTREESVTEME
QELFEAEATAPAAAAEPLVDDAP
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaatccgttgctggcgcagctcaaacaacagctgcgcgaaaatctgccc
aagaaggaaggggtggtccgtgcctccgaccggggctttggcttcctcgagaccgataac
cgggagagctacttcatcccgcccatgcagatgaagaaggtgatgcacggcgatcgcatc
agcgccgtcatccgcaccgagagagaaaaggaacaggcggaacccgatgccctgatcacc
cccttcctgacccgcttcgtcggccgcatcaagctgatcaaggatcggctgaacgtcgtg
ccggaccatccggtactcaaggagatgatccgcgcccgcgccatcaagggactggacgag
aagcagttccaggaaggcgactgggtggtggccaggctcaagcgccacgccatgaccgac
ggcaaccatgccgccgagatcagtgagctcatctgccgtggcgaggatccggaagccccc
tggtgggtggtgctgcgccgccatgatctggcccgtcaggcccctgacgaggccgagagc
tggtcctatcatgaggaaggcctgccccgggaagatctcaccgccctgccgtttgtcacc
atagacggtgcctccaccaaggacatggacgatgccctctatgccgagccagccggcgac
ggctggaagctgtgggtggccatcgccgatcccaccgcctacctggaggcgggcagcccg
ctggatctggaagccgccaagcgcgccttcaccgtttacctgccgggccgcaacatcccc
atgatcccacgcaccctgagcgatgagctgtgctccctcaaggaaggcgaggagcggccg
gtgctctgctgccagctggacatcgccgccgacggcgccctgggccagttccgcttcttt
gccgccaatatccgctcccagggccgcctgatctacgaccaggtttccgactacctggag
cagggccagagcgccgagttcacccccaacgaggtgatcgccggccagctcaagctgctg
cagggcatcaccctcgcccgtcaggcctggcgcaccgagcatgccctgatgttcaaggac
agaccggactacgccttcgagctgaacgaggccggcgaggtggtggccattcacgtggaa
ccccgtcgtctggccaaccgcatggtggaagaagccatgatcgccgccaacatctgtgcc
ggccagttcctcactcagaccccgggctacggcatcttcaacgtgcatgccggttttgat
cccgagaagctgagcggggccatggagctgctgaccctgcacaatgccccctggcatgat
gagtccatcaataccctgccgggcttctgccagctgcgccgttggatggacgcccagccg
accccctacctggacagccgcatccgccgcttccagacctactctgtgatgtccgccctg
ccgggcccgcacttcggcctgggcctgccggcctacgccacctggacctcacccatccgc
aagtacggcgacatggtcaaccaccgcatcatcaaggcgctgctggccggtaccccggtg
cccgcctgtccggaagagccgctgacccagatcctgaccgatgcccgccgcctcaaccgc
ctggcggagcgcgacatcgccgactggctgtatgtgcgcttcctggcgcctgccgtcgcc
actggccaggtgttcccggcggagatcatcgatatcgtgcgggggggtatcaaggtgcgc
ctgcaggacaatggcgccgtggccttcgtaccggccgggcagatctgccgggataagaag
cggctggagtgcagctgggacgatggccaggtgcgcctggacaagcagccgctgttcgag
ctgggccaacaggttgaggtagtactcaaggatgccatcgaggccacccgctccctggtg
gccaccctggcccagccggtggatatcaccacccgggaagagtccgtcaccgagatggag
caggagctgttcgaggcagaagcgacggccccggccgccgccgccgagcccttggtggac
gacgccccctaa
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