Pseudaeromonas aegiceratis: ABHF91_02820
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Entry
ABHF91_02820 CDS
T10906
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pagi Pseudaeromonas aegiceratis
Pathway
pagi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABHF91_02820 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagi03019
]
ABHF91_02820 (rnr)
03016 Transfer RNA biogenesis [BR:
pagi03016
]
ABHF91_02820 (rnr)
Enzymes [BR:
pagi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABHF91_02820 (rnr)
Messenger RNA biogenesis [BR:
pagi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABHF91_02820 (rnr)
Transfer RNA biogenesis [BR:
pagi03016
]
Prokaryotic type
tRNA degradation factors
ABHF91_02820 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
CSD
MCM5_C
Motif
Other DBs
NCBI-ProteinID:
XLW41421
LinkDB
All DBs
Position
554729..557128
Genome browser
AA seq
799 aa
AA seq
DB search
MSSQDTPAQDPFLAREAEKYDNPIPSREFILAIIEQRQAPVSHAELVTEFNLQEEEQVEA
LRRRLRAMERDGQLIFTRAKSYALPSRMNLVKGTVLGHKDGFGFLRPEGGGSDLFLGPRE
MSGLMHGDFVLVQPTRTDAKGRQEARLVRLLQSRELEIVGRYFIENEVCFVVPDDSRIDQ
DILIPAGKNLGARQGQMVVARITQRPTARVNAMGEVIEVLGDHMEPGMEIEVAIRNYGIP
HVWPSEVLTQIKDLHEEVSEEAKAGRVDLRGIPLVTIDGEDARDFDDAVFCQAKPAGGWR
LWVAIADVSYYVRPGQPLDHEAELRGNSVYFPEQVIPMLPEVLSNGLCSLNPQVDRLCMV
CEMTISAQGKLSGYRFYEGVMNSHARLTYSKVAAILDGDPRLREHYGPLVPYLEELHKLY
HALKRNRHQRGAVEFESDETRFVFNAQRKIERIVPLIRNDAHKIIEECMIQANVAAARFI
EHHEADTLFRIHERPGEMKLETFRHFLAELGLELKGGLEPEPRDFADLAELVQDRPDAEL
INTMLLRSMQQAVYSADNQGHFGLALKSYAHFTSPIRRYPDLVLHRAIKFQLAKEQGKPK
HKWTPTGGYNYQYDEVAPLGEQCSMTERRADEATRDVADWLKCEYMQDHVGDELDGVIAS
VTGFGLFVRLSELHIDGLVHISTLTNDYYQFDPARQTLIGQTFRRVYRLGDKVRVKVMGV
SLDDRKIDFVLVEDGVALGGNGGKSGKGARQKPAPAAARKGPAKAARAGDGKKRKSSKKP
EADADKKVPSKAKRQGKKK
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccaagatacgcccgcacaagatcccttcctggcccgcgaagccgaaaaatac
gacaaccccattcccagccgtgagttcatcctcgccatcatagagcagcgccaggcgccg
gtatcccatgccgagctggtgaccgagttcaacctgcaggaagaggagcaggtcgaagcg
ctgcggcgtcgtctgcgggccatggagcgggatggccagctgatcttcacccgggccaag
agctacgccctgccgtcgcgcatgaacctggtgaagggcactgtgctgggtcacaaggat
ggcttcggcttcctgcgtcccgagggcggtggcagcgatctgttcctgggcccgcgggag
atgagcggcctgatgcacggcgacttcgtgctggtgcagcccacccgcaccgatgccaag
gggcggcaggaggctcgtctggtgcgcctgctgcaatcccgcgagctggagatcgtcggc
cgttacttcatcgagaacgaggtctgcttcgtggtgcccgatgacagccgcatcgaccag
gacatcctgatccccgccggcaagaacctgggggcgcgtcagggccagatggtggtggcg
cgcatcacccagcggcccaccgcccgggtcaacgccatgggcgaggtgatcgaggtgctg
ggcgatcacatggaacctggcatggagatcgaggtggccattcgcaactatggcatcccc
catgtctggccgtccgaggtgctgacccagatcaaggatctccatgaggaggtctcggaa
gaggccaaggcgggccgagtggatctgcggggcatccccctggtgaccatagacggtgag
gatgcccgggacttcgacgatgcggtgttctgtcaggccaagcccgccggtggctggcgc
ctgtgggtggccatcgccgacgtctcctactatgtgcgaccgggccagccgctggatcat
gaggccgagctgcggggcaactcagtctacttccccgagcaggtgatccccatgctgccg
gaggtgctgtccaacggcctctgctccttgaatccccaggtggatcgcctgtgcatggtg
tgcgagatgaccatctccgcccagggcaagctctccggttaccgcttctacgagggggtg
atgaactcccacgcccgcctcacctactccaaggtggcggccatcctggacggggacccg
cgcctgcgggagcattacggccccctggtgccctacctggaagagctgcacaagctctat
cacgccctgaagcgcaaccgtcatcagcgcggcgccgtggagtttgagagcgacgagacc
cgcttcgtgttcaacgctcagcgcaagatcgaacgcatcgtgcccctcatccgcaacgac
gcccacaagatcatcgaagagtgcatgatccaggcgaacgtggcggcggcccgcttcatc
gagcaccacgaggccgataccctgttccgtatccacgagcggcccggcgagatgaagctg
gagaccttccgccacttcctggccgaactggggctggagctcaagggcgggctggagccc
gagccgcgggacttcgccgacctggcggagctggtgcaggacaggcccgatgccgagctc
atcaacaccatgctgctgcgctccatgcagcaggcggtgtacagcgccgacaaccagggc
cacttcggcctggcgctcaagtcctacgcccacttcacctcgcccatccgccgctacccg
gatctggtgctgcaccgggccatcaagttccagctggccaaggagcagggcaaacccaag
cacaagtggacccccaccggcggctacaactaccagtacgacgaggtggcgcccctgggc
gagcagtgctccatgacagagcggcgcgccgacgaggccacccgggacgtggcggactgg
ctcaagtgcgaatacatgcaggatcacgtgggggacgagttggacggggtcatcgcctcg
gtcaccggcttcggcctgttcgtccgtctgtccgagctgcacatcgatggcctggtgcac
atcagcaccctgaccaacgactactaccagttcgacccggcccgccagaccctgatcggc
cagaccttccgtcgggtctaccggctgggggacaaggtgcgggtcaaggtgatgggcgtc
agcctggatgatcgcaagatcgacttcgtgctggtggaggacggggtcgccctcggtggc
aacgggggcaagagcggcaagggggcgcgccaaaagccggcgcccgcggcggccaggaag
ggcccggccaaagccgcccgagccggtgacggcaagaagcgcaagagcagcaaaaaaccg
gaggcggatgccgacaagaaggtgccgtccaaggctaaacgtcaaggcaagaagaaatga
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