Pseudaeromonas aegiceratis: ABHF91_06005
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Entry
ABHF91_06005 CDS
T10906
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pagi Pseudaeromonas aegiceratis
Pathway
pagi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pagi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABHF91_06005 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagi03400
]
ABHF91_06005 (mfd)
Enzymes [BR:
pagi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABHF91_06005 (mfd)
DNA repair and recombination proteins [BR:
pagi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABHF91_06005 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
DUF7267
Motif
Other DBs
NCBI-ProteinID:
XLW42025
LinkDB
All DBs
Position
complement(1261201..1264650)
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AA seq
1149 aa
AA seq
DB search
MSQLFHLTPPTRAGERQTLGNLPGSSLALAAAELVRAHPHPVLILVADTPAALRLEQELQ
FLLQDAALPVLLFPDWETLPYDSFSPHQDIISQRLETLYRLPRMARGALILPIATLMLRC
APASFIDRFSLLVNPGDKLDLHGLRRRLEQAGYLAVEQVLEHGEFAARGSLLDLFPMGSR
EPYRIDFFDDEVDTIRTFDPDSQRSSSPVPEVRLLPAHEFPTDQEAIEGFRQRYRERFDI
SRAPECIYQQVSKGHWPAGIEYYLPLFFEQTATLLDYLPADSLLLTQGDLPAASQQFWDD
VQQRFANRRVDPARPLLPPEALYLPVDQLFGAIKPYAQIHLQAEETQTKAGRLNLPVAGL
PDLTVDAQAADPLARLKAFLAEYPGRVLLCAESEGRRESLRDLLAPLGSTLPEFTSLSAF
AQAKESLGVLVCPLQQGFVLRDAGLALIAEAELLGQKVIQRRRRDRQKGGASGDAIIRNL
AELSIGQPVVHLEHGVGRYLGLQTIDAGGLATEYLTLEYANQDKLYVPVTSLHLISRYSG
GEHPPLHKLGTDAWNKARKKAAEKVRDVAAELLDVYARRAARPGLAFRHDKQAYASFAAT
FPFEETPDQLNAINAVLGDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVLV
PTTLLAQQHYDNFRDRFANWPVRIEVLSRFKSAKEQKLALDALGDGKLDIIIGTHKLLSD
DIRFKDLGLLIVDEEHRFGVRQKEKLKALRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAIKTFVREYDKALIREAVLRELKRGGQIYFLHNDVETIDKTAEQLAELLPEA
RISVAHGQMRERELEKVMSDFYHQRHNLLVCTTIIETGIDVPSANTIIMDRADRLGLAQL
HQLRGRVGRSHHQAYAYLLTPHPKAMTPDAVKRLEAIESLEDLGAGFVLATHDLEIRGAG
ELLGDDQSGQIESIGFTLYMEMLEEAVAALKEGREPSLDQLLSGHTDIDLRVPTLLPDDY
IPDVNMRLSLYKRIASADSQSALDDLKVELIDRFGLLPEPAKHLLALAAQRLRAAPLGIK
RIEVGAGGALVEFTEHTKVDPMKVVSLLQSQPRIFKMDGPTKLRIGMPAVDAKARFGLLE
QLLGQLGAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgagccaattgtttcacctgaccccgcccacccgggccggggaacgccagaccctggga
aacctgccgggcagcagcctggccctggccgccgccgagctggtgcgcgcccacccccat
ccggtactgatactggtggccgacaccccggccgccctgcgcctggagcaggagctgcag
ttcctgctgcaggatgccgccctgccggtgttgctgttcccggactgggagaccctgcct
tacgacagcttctccccccaccaggacatcatctcccaacggctggagaccctctatcgc
ctgccgcgcatggccagaggcgccctgatcctgcccatcgccaccctgatgctgcgctgc
gcgccggccagcttcatcgaccgcttcagcctgctggtgaaccccggcgacaagctggac
ctgcacggtctgcgccgtcggttggagcaggccggctacctagcggtggagcaggtgctg
gagcacggcgagttcgccgctcgcggctccttgctggatctcttccccatgggatcgcgt
gagccctatcgcatcgacttcttcgatgatgaggtggacaccatccgcaccttcgatccg
gacagccagcgctccagcagcccggttcccgaggtgcgcctgctgccggcccatgagttt
cccacggatcaggaggccatcgagggcttccgccaacgctaccgggagcgcttcgacatc
agccgcgcccccgagtgcatctatcagcaggtgagcaagggccactggcccgccggcatc
gaatactatctgccgctgttcttcgaacagaccgccaccctgctggactacctgcccgcg
gacagcctgctgctgacccagggggatctgccggcggccagccagcagttctgggacgac
gtgcagcagcgctttgccaaccgccgggtggatcccgcccgcccgctgttgccccccgag
gcactctacctgccggtggatcagctgtttggcgccatcaagccctatgcccagatccat
ttgcaggcggaagagacccagaccaaggcgggccgcctcaacctgccggtggccggcctg
ccggatctcaccgtcgacgcccaggccgccgatcccctcgcccgcctcaaggccttcctg
gcggagtaccccggccgggtgctgctgtgcgccgagtcagaaggtcgccgggagagcctg
cgggatctgctggcgcccctgggcagtacgctgcccgagttcaccagcctgagcgccttt
gcccaggccaaggagtcgctgggggtgctggtctgcccgctgcagcagggcttcgtgctg
cgcgacgccggcctggccctcatcgccgaggccgagctgctgggccagaaggtgatccag
cgccgccgccgagaccggcaaaagggcggagccagtggcgatgccatcatccgcaacctg
gcggagctgagcataggtcagccggtggtgcacctggagcacggcgtcggccgctacctg
gggctgcagaccatagacgccggcggcctggccaccgagtacctgaccctggagtacgcc
aatcaggacaagctctatgtgccggtgacctccctgcacctcatcagccgctacagcggc
ggcgagcacccgcccctgcacaaactgggcaccgatgcctggaacaaggcgcgcaagaag
gctgccgagaaggtgcgggacgtggccgccgagctgctggatgtctacgcccgccgcgcc
gcgcggcccggcctggccttccgccacgacaagcaggcctatgccagcttcgccgccacc
ttccccttcgaggagaccccggatcagctcaacgccatcaatgcggtgctgggggacatg
tgccaggccaaggccatggatcgcctggtgtgtggtgacgtgggcttcggcaagacggag
gtggccatgcgggccgccttcgtggcggtgcacggcggcaagcaggtggcggtgctggtg
cccaccaccttgctggcccagcagcactacgacaacttccgcgaccgcttcgccaactgg
ccggtgcgcattgaggtgctgagccgcttcaagagcgccaaggagcaaaaactcgccctg
gacgccctgggggacggcaagctcgacatcatcatcggcacccacaagctgctgtccgac
gacatccgcttcaaggatctggggctgctcatcgtcgatgaggagcacagattcggcgtg
cggcagaaggagaagctcaaggccctgcgggcggacgtggatatcctgaccctcaccgcc
acccccatcccccgcaccctgaacatggccatgagcggcatgcgggatctctccatcatc
gccaccccgccggcccgccggctggccatcaagaccttcgtgcgggagtacgacaaggcg
ttgatccgcgaggcggtgctgcgggaattgaaacgcggtggtcagatctacttcctgcac
aacgatgtggagaccatcgacaagaccgccgaacagctggccgagctgttgcccgaggcg
cgcatcagcgtggcccacggccagatgcgggagcgggagctggagaaggtgatgagcgac
ttctaccaccagcgccacaacctgctggtgtgcaccaccatcatagaaaccggcatcgac
gtgcccagcgccaacaccatcatcatggaccgcgccgaccgcctggggctggcccagctg
caccagctgcgtggccgggtcggtcgctcccaccaccaggcctacgcctacctgctcacc
cctcaccccaaggccatgaccccggatgcggtcaagcgcctggaggccatcgaatccctg
gaggatctgggggccggcttcgtgctggccacccacgatctggagatccgcggcgccggc
gagctgctgggggacgatcagagcgggcagatcgagtccatcggcttcaccctctacatg
gagatgctcgaggaggcggtggcggcattgaaggaaggccgggaaccctcactggatcag
ctgctcagcggccacaccgacatcgatctgcgggtgccgaccctgctgccggatgactac
atcccggatgtgaacatgcgcctctccctgtacaagcgcatcgccagcgccgacagccag
tccgccctggatgacctcaaggtggagctcatcgaccgcttcggcctgctgcccgagccc
gccaaacacctgctggccctggcggcccagcggctgcgggcggcgcccctgggcatcaag
cgcattgaggtaggtgccggcggcgccctggtggaattcaccgagcacaccaaggtggac
cccatgaaggtggtcagcctgctgcagagccagccgcgcatcttcaagatggacggtccc
accaagttgcgcatcggcatgccggcggtggacgccaaggcccgctttggcctgctggaa
cagctgctcggccaattgggcgcggcgtga
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