Pseudaeromonas aegiceratis: ABHF91_09335
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Entry
ABHF91_09335 CDS
T10906
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pagi Pseudaeromonas aegiceratis
Pathway
pagi03018
RNA degradation
Brite
Enzymes [BR:
pagi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABHF91_09335 (rne)
Messenger RNA biogenesis [BR:
pagi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABHF91_09335 (rne)
Ribosome biogenesis [BR:
pagi03009
]
Prokaryotic type
rRNA processing factors
ABHF91_09335 (rne)
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SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XLW39437
LinkDB
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Position
1975431..1978466
Genome browser
AA seq
1011 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQRIYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSLQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALNGLEVPEGMGLIVRTAGVGKSPEEL
AWDLNVLLKHWETIKQAAQNQAAPFLIHQESNVIVRAIRDYLRRDIGEILIDNPTVFEKA
KQHIELVRPDFVNRVKPYNGEIPMFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLRDAVRQDRARIQLGRISRFGLLELSRQRLRPSLNESSTHVCPRCMGQGTIRDNESLAL
AILRLLEEEALKDNTEQVLAQVPVDVAAYLLNEKRPSIQRLEERHQVRIFIIPHQGMETP
HFEVSRMRSSEVTEALSYELKSELPVDGYTPRDTTKVVRSEQPAVQIIAAPTTPAPAPAP
VAAPVVLPQEPGLFSKLFAAIMALFKPAAEPSQPQEKPAPKAKPEARQRRREGDRRRPAG
GDNRRSRPQADKADEEEGQAKSEARPNNRRPRNEATGDKTDRPSRGERRPRQPKEAAAEG
SPRQERRPRNQPQATAEPSEQQEAVPAEQPSRAPKEEKVAERRQRRSQRRKVRVAAEVSD
AQVQQAAVVEVPAPQAEPAPQAEPQPPMLEPLVPVMPTDLPPMIMIEDDEETRAPTVNEA
PVAEAIESIEANIDAPVAMEDADGEPAKRPQRRKRINEESRQRRRQETEQPAEESPEALA
VQEVAAESSVEPEAAPVAPADRQQQAEAQPERRSRRRKPDAVVVDDVVLVEEPVSAEETE
VAEADAPLAQLDAPIAVHAEPEVPVSKAEVEAEPAVSQPMAAAPAATKAPGVVSRMQLVT
CQMAQPAEAPAQPARPVVDYPAYERKPTLHSGRAAGVSGMRSQASHGPANP
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcaactcaggaagaagagttgcgcgtggccctggtagac
gggcaacgcatttacgacctggacatcgaaagtcccggtcacgaacagaaaaaagccaac
atctacaaagggaagatcacccgcgtcgaaccgagtctggaggccgcctttgtcgactac
ggcgccgaacgtcacggtttcctgccgctcaaggagattgcccgcgaatatttccccgcc
aactacagcctccagggtcgccccaatatcaaggaagtgatcaaggaaggtcaggaagtc
atcgtccagatcgacaaggaagaacgtggtaacaagggcgccgccctcaccaccttcatc
agtctggccggtagctacttggtgctgatgcccaacaacccccgtgccggtggtatctcc
cgccgtatcgaaggggatgaacgcaccgagctcaaggaagccctcaatgggctggaagtg
ccggaaggcatgggcctcatagtgcggactgccggtgtcggcaagtcccccgaagagctg
gcctgggacctcaatgtcctgctcaaacactgggagaccatcaagcaagccgcgcagaac
caggctgcccccttcctgatccaccaggaaagcaacgtgatagtgcgggccatccgtgac
tacctgcgccgggatatcggcgagatcctgatcgacaacccgacggtgttcgagaaggca
aagcagcacatcgaactggtgcgcccggacttcgtcaatcgggtcaagccgtacaacggt
gagatcccgatgttcacccattaccagatcgagagccagattgagtcggccttccaacgc
gaagtgcgcctgccctccggcggctccatcgtcatcgaccccaccgaggccctgacctcc
atcgacatcaactcggcgcgcgccaccaagggcggtgacatcgaggagacggccctgcag
accaacctggaagccgccgacgagatcgcccgccagctgcgtctgcgcgacctgggtggc
ctcatcgtcatcgacttcatcgacatgacgccggtgcgccaccagcgtgaagtggaaaac
cgcctgcgggatgccgtgcgccaggacagggctcgcatccagctgggccgcatctcccgc
ttcggcctgctggagctgtcccgtcagcgcctgcgcccctccctcaatgaatccagcacc
catgtctgcccgcgctgcatgggtcaggggaccatccgggataacgaatccctggcactg
gccatcctgcgcctgctggaagaagaggccctcaaggacaacacagaacaggtgctggcc
caggtgccggtggacgtcgccgcctatctgctcaacgagaagcgcccgtccattcaacgc
ctggaagagcgccatcaggtgcggatcttcatcattccccaccagggaatggagacaccg
cacttcgaggtgtcccggatgcgcagcagtgaagtcaccgaggccctcagctacgagctg
aagagcgagctgccggtggatggctacacgccgcgcgataccaccaaggtggtgcgcagc
gagcagccggcggtgcagatcatcgccgcccccaccaccccggcaccggctccggccccc
gtcgccgcccctgtggtgctgccccaggaacctggtctgttcagcaagctgttcgccgcc
atcatggcgctgttcaagcctgccgccgagcccagccaaccccaggaaaaaccggcgccc
aaggcgaagcccgaggcacggcaacgtcgccgtgaaggtgatcgccggcgtccggccggt
ggtgacaatcgccgcagccgcccgcaggccgacaaggccgatgaggaagagggtcaggcc
aagagcgaagcacggccgaacaaccgtcgtccgcgcaacgaggccaccggtgacaagacc
gatcgtccgtctcgtggcgagcgtcgtcctcgtcaacccaaggaagccgccgccgaaggc
agcccgcgtcaggaacgccggccccgcaatcagcctcaggcgactgccgagcccagcgaa
cagcaggaggcagtgccagccgagcagccaagccgtgcgcccaaagaagagaaggtagcc
gaacgccgtcaacgccgcagtcagcgccgcaaggtgcgggtggccgccgaggtgagcgat
gcccaggtccagcaggccgccgtggtcgaggtgccggctccccaggctgagccagccccg
caggccgagccccagccgcccatgctggagcccctggtgcccgtgatgcccaccgacctg
ccgccgatgatcatgatcgaggacgacgaagagacccgtgctccgaccgtgaacgaggcg
ccggtggctgaggccatcgagtccatcgaggccaacatcgacgcaccggtggccatggag
gacgccgacggcgagccggccaaacggccccaacgtcgcaagcggatcaacgaagagtcc
cgccagcgtcgtcgtcaggagaccgagcagcctgccgaagagagcccagaggccctggcg
gtgcaagaggttgcggctgagagcagcgtcgaacccgaggcagcgcctgttgccccggcc
gacaggcagcagcaagcagaagcccaaccggaacgccgctctcgtcgtcgcaagcccgat
gccgtggtggtggatgacgtagtgctggtagaagagccggttagcgccgaagagaccgag
gtggcagaagcagacgcccccctggcccagctggacgcccccattgccgtgcatgccgaa
cctgaggtgccggtgagcaaggcagaggtagaggccgagccggcggtgagccaaccgatg
gctgcggcacctgccgcgaccaaggcaccgggtgtggtctcccgcatgcaactggtgacc
tgccagatggcccagcccgccgaggcgccggcccagccggcccgccctgtggtggactac
ccggcctatgagcgcaagcccaccctgcattccggccgtgccgccggtgtgagtggcatg
cgcagccaggcctctcatgggccagccaatccttaa
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