Paenarthrobacter sp. GOM3: IRJ34_01310
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Entry
IRJ34_01310 CDS
T10366
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pago Paenarthrobacter sp. GOM3
Brite
KEGG Orthology (KO) [BR:
pago00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pago03032
]
IRJ34_01310
03400 DNA repair and recombination proteins [BR:
pago03400
]
IRJ34_01310
Enzymes [BR:
pago01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IRJ34_01310
DNA replication proteins [BR:
pago03032
]
Prokaryotic type
DNA Topoisomerases
IRJ34_01310
DNA repair and recombination proteins [BR:
pago03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IRJ34_01310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF4982
Motif
Other DBs
NCBI-ProteinID:
WOH18992
LinkDB
All DBs
Position
259274..260230
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AA seq
318 aa
AA seq
DB search
MPRLKRSDLSKPGIVRRKVGKGFSYRQPDGSLVSKEDRQRINALAIPPAWTEVWICPYEN
GHIQATGVDAAGRSQYMYHPRWRERKDTEKFQRAAELGSVFPAVRRAVTLHLKDTSSPKQ
QTIAAAVRLMDLGALRVGSESYMRQNGSYGLTTLRCRHARVKGDAVALKFPGKSGQLWDT
SIHDPALAAFLEPLARRPGKERLLAYKADGSWVSLDASMINEYLRKIAGAAYTSKDFRTW
KGTAAAALSLLSSDGIMTRPQALVKAMKDAAALLGNTPTVARTSYVDPRIVEAYLSGELQ
AVKATEPSIAAFLIEKQS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgccacggcttaagcgaagcgacctttccaagcccggcatcgtccgccgcaaggtgggc
aagggcttcagctaccgtcaaccggacgggagcctggtcagcaaggaggatcgccagcgc
atcaacgcgctggcgatcccgcctgcctggactgaagtgtggatctgtccctacgaaaac
ggacacatccaagccaccggcgtggacgcggccggtcgcagccaatacatgtaccacccc
cgctggcgtgaacgtaaggacacggagaagttccagcgcgcggcggagttgggctccgtg
ttccctgcagtgcgccgggccgtcacgctgcacctcaaggacacgtcctcgcccaagcaa
caaaccatcgcagctgcggtgcggctaatggacctcggcgctttgcgcgttggctccgaa
agctacatgcgccagaacggttcctatgggctcactaccctccgctgccggcatgcgcgg
gtcaagggcgatgccgtggcgctgaagttccccggcaagagcgggcaactgtgggacacc
tccatccacgaccccgccctggccgcgttcctggagcccctggcccgacgcccgggcaag
gaacgcttgttggcttacaaggcggacgggtcctgggtctccttggatgcctccatgatc
aatgagtaccttcgcaagattgccggggccgcctacacgtcaaaggatttccgcacgtgg
aaggggacggctgccgccgcactcagcctgttgagttccgatggcatcatgacgcgtccc
caggcgctggtgaaagccatgaaggacgcggcggccctcctcggcaacactccaacagtg
gcccgcacgtcctatgtagacccgcggatcgttgaggcctacttgtccggggaactgcag
gcagtcaaggccacggaaccttccattgctgcattcctgatcgaaaaacaaagctag
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