Paenarthrobacter sp. GOM3: IRJ34_11900
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Entry
IRJ34_11900 CDS
T10366
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pago Paenarthrobacter sp. GOM3
Pathway
pago03018
RNA degradation
Brite
Enzymes [BR:
pago01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IRJ34_11900
Messenger RNA biogenesis [BR:
pago03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IRJ34_11900
Ribosome biogenesis [BR:
pago03009
]
Prokaryotic type
rRNA processing factors
IRJ34_11900
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WOH17073
LinkDB
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Position
complement(2556541..2559720)
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AA seq
1059 aa
AA seq
DB search
MDKDQVVAVNDEAAPAETAEAPKKTTRTRRKAAPKETPAVESTSSEVPVSVEGTETPEAA
AAPVRRTRSRKKVEPAEPLPGLGEETAGAPEAAAIESQPEAAAEPAPEKPVRRRRTAKPK
AEAVEAPAAEETTTPDAASQPGEPVAEVTAATPAEEAPVPAAEEAPAEEETPAASTSLFL
EPVSITSMIFQAPDLTTVPRVAVVEEKAEESEEEAETSADAELDDAGSRRRRRSRGRRGR
RGTEREENETEDPNESEDEEAPATEVLEEGVTSRRRRRRRRGDQDLELTGGTDDDPPNTV
TRVRAPRPITESAPSNRVTSVKGSTRLEAKKQRRRESRETGRRRQVITEAEFLARRESVD
RQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR
GRNAVLYAGEVNWDAVNLEGQPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPGR
YLVYVPGGSMTGISRKLPDVERNRLKRILKDRLPENAGVIVRTAAEGASEEELTHDINRL
RAQWEGIEGQASSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGDDAWDTIEAYVT
YVAPDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNT
GKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVE
CLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEHCAGRGVVTHDEPVEHRRAN
VVAAEHHRPHTETQQQQQPAARTERKRRRGKGGGQAVPEAPAPVQVAPSVPAATSTHTEP
QDPARQAKAEATRAALATIAAAAHAAHLHDDELHRAEELARSTHQSAAAEPAVHSDDEES
VAHDAAVREARSTPVLRFGGEEVALPFVEHQEEPQAAKPPMSLDLLAEAFSHLGAAPEQE
AAATAVREPAAAPKAAAPEQAVEQDPEAASATRSRRGRRNRSASRAQGAANETSVEHHDV
TASTPQGSAHEAKAPAEPAKKAPAVEPIILGVGVPASEL
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaccaggttgtagccgttaatgacgaggcagctcccgcggaaacagcggaa
gcgccgaagaagaccacccggacccgccgcaaggccgcgcccaaggaaactcctgcggtt
gaatcgaccagcagcgaagtgcccgtctctgttgaagggaccgaaaccccggaagcggcc
gccgcgccggtgcgcaggacccggtcccgcaagaaggttgaacccgccgagccgctgccg
ggcttgggcgaggaaaccgctggcgcccccgaggccgcagcaattgagagccagccagaa
gctgccgccgaacccgcgccggaaaagccggtccgccgtcgtcgtacggcaaagccgaag
gcagaagcagtagaggcgcctgccgctgaagaaaccacgacgccggatgccgcctcccag
cccggggaacctgtcgctgaggtcaccgcggcaaccccggctgaagaggctccggtccct
gctgcggaggaggcccccgctgaggaggaaaccccggcggcgtccacgtccctgttcctt
gagcctgtttccatcacgtccatgattttccaggccccggacctcaccaccgtcccgcgc
gttgcggtcgtggaagagaaggccgaggaatccgaagaagaagctgagaccagcgcggac
gccgaactcgatgacgccggcagccgccgtcgtcgccggagccgtggccgccgcggcagg
cgtggaaccgaacgcgaagagaacgaaaccgaggatcccaacgagtccgaggatgaagaa
gcccccgcaacggaggtcctcgaagaaggcgtcacgtcgcgtcgtcgccgtcgccgccgc
cgcggtgaccaggatcttgaactgaccggcggtacggatgacgacccgcccaacacggtg
acccgcgtccgcgcgccccggcccatcacggaaagcgctccatcgaaccgcgtcaccagc
gtcaagggctccacacggcttgaagccaagaagcagcgccgcagggagtcccgcgaaacc
ggccgccgccgccaggtcatcaccgaagccgagttccttgcgcgccgcgagtcggtagac
cgccaaatgatcgtccgccagcgcgacgacagaatccagatcggcgtccttgaggacggc
gtcctggctgagcatttcgtgtccaagacacagcaggattccctgatcggcaacgtgtac
ctgggcaaggtccagaacgtactgccctccatggaagccgcgttcgtggacattggccgt
ggccggaacgccgtgctgtacgccggtgaagtcaactgggatgctgtcaaccttgaaggc
cagccgcgccggatcgagaacgccctgaagtccggcgactccgtcctggtacaggtcacc
aaggaccccgtgggtcacaagggtgcccgcctgaccagccagatttcgctgccgggccgc
taccttgtgtacgtgccgggcggctccatgaccggcatctcccgcaagttgcctgacgtc
gaacgcaaccgcctcaagcgcatcctcaaggaccgcctgccggaaaacgccggtgtcatt
gtccgcaccgcggccgagggcgcctcggaagaagagctgacgcacgacatcaaccgcctg
cgcgcgcagtgggagggcattgaggggcaggcctcctcaaccaaggtgctggcgccggaa
ctgctgtacggcgaacctgacctgaccatcaaggtagtgcgcgacgtcttcaacgaagac
ttctccaagctgatcgtctcgggcgacgacgcatgggacaccattgaggcttacgtaacc
tacgtagcccccgacctggtgggacgcctcgaaaagtggaccaaggaccaggacatcttc
gctgcctggcgcatcgacgagcagatccacaaggccctggaacgcaaggtcttcctgccc
tccggtggttcattggtcattgaccgcaccgaagccatgaccgtggtggacgtcaacacc
ggtaagttcaccggcagcggcggaaaccttgaagagaccgtcaccaagaacaacctcgaa
gctgccgaggaagtagttcgccagctgcgcctgcgcgatatcggcggcatcattgtcatc
gacttcatcgacatggtcctggaatccaaccgtgatcttgtcctgcgccgcatggttgaa
tgccttggccgcgaccgcactaagcaccaggtcgccgaggtcacgtccctgggcttggtc
cagatgacgcgtaagcgcatgggcaccggcctcctcgaggtctttggcgaacagtgcgag
cactgcgcaggacgtggcgtcgtgacccacgacgagccggtggagcaccgccgcgccaac
gtggtggccgccgagcaccaccgcccgcacacggagacgcagcagcagcagcaaccggcc
gcccgaacggaacgaaagcgtcgccgtggcaagggcgggggacaggctgttcctgaagcc
cccgcaccggttcaggttgcaccatccgtacccgccgccacgtcgacgcacaccgaaccg
caggaccctgcgcgccaggcaaaggccgaggccaccagggctgcgttggcaacgatcgcg
gccgcagcacacgccgcccacctgcacgacgacgagcttcaccgtgcagaggaactggcc
cgctcaacgcatcagtcggccgccgccgaacccgccgttcacagcgacgacgaagaatca
gtggcccacgacgcggcggttcgggaagcacgctccaccccggtcctgcgtttcggtggc
gaagaagtcgccttgccgttcgttgagcaccaggaagaaccccaggctgccaagccgccc
atgagcttggatctgctggccgaggcgttctcccatctcggagcggcgccggagcaggag
gcggcagcaacggctgtccgcgaacctgctgctgccccgaaggcggcagcgccggaacag
gccgtcgaacaggatccggaagccgcttcggcgacccggagtcgtcgaggccgccgtaac
cgcagcgccagcagggcccagggtgcggccaacgaaacaagcgttgagcaccacgacgtg
actgcttcgacgccccagggttcggcccacgaggcgaaagcccctgctgaaccagccaaa
aaggcgcccgcagtcgagcccatcatcctgggagtgggcgtaccggcttccgagctctga
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