Paenarthrobacter sp. GOM3: IRJ34_15125
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Entry
IRJ34_15125 CDS
T10366
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pago Paenarthrobacter sp. GOM3
Pathway
pago03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pago00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IRJ34_15125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pago03019
]
IRJ34_15125
03009 Ribosome biogenesis [BR:
pago03009
]
IRJ34_15125
Enzymes [BR:
pago01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IRJ34_15125
Messenger RNA biogenesis [BR:
pago03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IRJ34_15125
Ribosome biogenesis [BR:
pago03009
]
Prokaryotic type
rRNA helicases
IRJ34_15125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WOH17667
LinkDB
All DBs
Position
complement(3247338..3249512)
Genome browser
AA seq
724 aa
AA seq
DB search
MTENLNENFDAPNDESAETAPVAEAVETAAPAEAEAPAAAAAPVETAAAEAAAPAFTEAP
APKADEDEEEGVRFAELGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGT
GKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLP
VYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFAD
DVEQIFQQTPEDRQVALFSATMPGQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVM
GPHKLDALTRILEVEEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTV
DALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILF
MTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAAFRDLIS
SYEEEHNVPAAEIAAALAVMAQGGQPLLVKELPAAPEYQKRERSKDGFGSRGPTRALTEG
NATYRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRAL
SRTRIGGELINLELDNGRRPSSERGGYSGGGRGGYGDRENRGGGNFKGNGGFKKDFRKSD
GERTSADRGGRSYSDRSERTAGSFGDRDRGQASGSRFGGHGDGARKPRSGGEGGHRDFNR
KGKW
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaatctcaacgaaaacttcgacgccccgaacgatgagtctgctgaaacagcc
cccgttgctgaagcagtagagaccgccgcacccgccgaagctgaagcaccggctgctgcc
gctgcccccgtcgagactgccgcagctgaggctgcagcccccgccttcaccgaagctcct
gctcccaaggcagacgaggacgaagaagaaggcgttcgctttgccgagctcggcatcgac
ggccgcgttctggccgcactgcaggatgtcggctacgaaaagccgtcacccatccaggcc
gcaaccatcccgctgctccttgagggccgcgacgtcgttggcctggctcagaccggtacc
ggcaagaccgcagcatttgctgtcccggccctgtcgcgcctggctgaacttcacgacctc
aacggcccgtcccgcaagacccaggcattggtcctggctcccacgcgtgaactggccctc
caggttgccgaggctttcacctcctacgccaagcacattgacgacttcactgtcctgccg
gtgtacggtggctcggcctacggcccgcagcttgccggccttcgccgtggcgcacaggtt
gttgttggtacccccggccgcgtgatcgaccacatcgccaagggttccctggacctttcc
gagctccagtacctcgtccttgacgaagctgacgagatgctgcgcatgggcttcgccgat
gacgttgagcagatcttccagcagacccccgaggaccgccaggttgcactgttctcggcc
accatgccgggccagatccgccgcatgtccaagcagtacctgaacaacccggctgagatc
tcggtgaagtccaagaccaccaccggcgccaacacccgccagcgctacctgcaggtcatg
ggcccgcacaagctggacgcactgacccgcatccttgaggttgaggaattcgacggcgtt
atcgccttcgtgcggaccaagatggctaccgaggacctggctgacaagctaaaggcacgg
ggcttccaggctgccgccatcaacggcgacatcccgcagcagcagcgcgaacgcactgtt
gacgcgctcaaggaaggccgcatcgacatcctggttgctaccgacgtcgcagcccgtggt
cttgacgttgagcgcatcagccacgtcatcaactacgacatcccgcacgacaccgagtcc
tacgtccaccgcattggccgtaccggccgtgcaggccgttccggtgacgcgatcctgttc
atgacgccgcgcgagaagtacttgctgcgttccatcgagaaggccacgcgccagccggtc
gagcagatgcacctgcccaccgcggagaccgtgaacacgctgcgcctgggcaagttcgcc
gagcgcatcaccgagaccctcgcgtccgaggatgtcgcagcgttccgcgacctcatctct
tcctacgaagaagagcacaacgttccggctgcggagatcgcagctgccctggccgtcatg
gcccagggtggtcagcccctcctggtcaaggaactgcctgcagctcctgagtaccagaag
cgcgagcgctccaaggacggcttcggttcccgtggcccgacccgtgcactcaccgagggc
aacgctacctaccggatcgccgtcggacgccgtcagcgcgttatgccgggctccatcgtt
ggcgccatcgccaacgagggtggcatctcgtccgcacagatcggtggcatcgacatccgc
tcggaccactccctggtggagctcccggcagacctgagccccgagcagctgcgcgcactt
tcccgcacccgcatcggcggcgagctgatcaacctcgagctggacaacggccgcaggccg
agcagcgaacgtggtggctactccggcggtggacgcggtggctacggcgaccgtgaaaac
cgtggtgggggaaacttcaagggcaacggcggcttcaagaaggacttccgcaagtccgac
ggcgagcgtacctccgctgaccgtggcggccgctcctacagcgaccgctctgagcgcacc
gcaggcagcttcggcgaccgcgatcgcggccaggccagcggatcccgcttcggcggacac
ggcgacggtgcacgcaagccccgcagtggcggcgaaggcggacaccgcgacttcaaccgc
aagggcaagtggtaa
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