Paenarthrobacter sp. GOM3: IRJ34_16885
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Entry
IRJ34_16885 CDS
T10366
Name
(GenBank) rhamnogalacturonan lyase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pago Paenarthrobacter sp. GOM3
Brite
KEGG Orthology (KO) [BR:
pago00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
IRJ34_16885
Enzymes [BR:
pago01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
IRJ34_16885
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Gene cluster
GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP_3
FG-GAP
Motif
Other DBs
NCBI-ProteinID:
WOH18007
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All DBs
Position
complement(3662570..3664600)
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AA seq
676 aa
AA seq
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MAYPSKCSYRPTRGRAWKAVPLAASASLAAAAIALTGVPLAQAAPTRLPQAAQVGLPGVV
PAAKDAASLKRQVENLDRAPVAVLTDQGVTVSWRMLGLDKDSVGFQVLRDGVNITPEPIR
NATMFVDPAGTAQSSYVIKTVGNGQGQDKLTEAVTPLAQNYLAIKLDKPADGVTPDGKAY
TYSANDATVADLDGDGKYEVIQTWSPSNSKDNSQSGYTGNVYVDAYKLDGTKLWRIDLGR
NIRAGAHYTQVLAYDFDGDGKAEVAFKTADGTKDAAGTVIGNADADFRNSAGYVLSGPEF
LTVFKGETGTILDTVAYEPERGTVSSWGDNYGNRVDRFLAGVAYLDGEHPSMMFSRGYYT
RTVLVTYDLVNGKFQKRWTFDSNVAGEQYKGQGNHNLSVVDVDQDGKDEFVFGSMTIDDN
GQPLYNTKLGHGDAIHTSDLDPSRPGLETFAVHESMSQSGNRGATFRDAATGEVLWSIPA
IKDTGRGAAGDIDPRYAGAEGWAVGGSAAWDSPVGQLMSAKGELIAEKIPAANFLAWWDG
DLLREIVDHDYDATVSRGVPTISKWNWETETSDRLLTAAGARSNNTTKGNPSIQADILGD
WREEIAWPSTDSSELRIYTTTAPTEVRLRTLMHDTVYRTAVARENVAYNQPPHPSFFIGE
GMQAQAMPAVVYTGKK
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
ttggcctacccctcgaaatgttcctaccgccccacccgaggccgtgcgtggaaagcagtc
ccgctcgcggcctccgcttcactcgctgccgcggccatcgcgctgacgggtgtcccactc
gcccaagcagcccccacccgactcccgcaggcagcgcaagttggccttcccggcgtcgtg
cctgccgcgaaagacgcagcatcgctaaagcgccaagtggaaaacctggaccgggcgccg
gttgcggttctgacggaccaaggtgtcaccgtgagttggcgcatgctgggcctggacaag
gacagcgtcggcttccaggtcctgcgcgatggcgtcaacatcactcctgagcccatccgc
aatgccaccatgttcgtggaccccgcaggcacggcacagtccagctacgtcatcaagacc
gtcggcaacgggcagggccaggacaagctgaccgaagcggtcacgccgctggcgcagaac
tacttggccattaagctcgacaaaccggctgacggagtgaccccggacggcaaggcttac
acgtactcggccaacgacgcgaccgtcgcggacctcgacggcgacggcaaatacgaggtc
attcagacctggtcgccgtccaattccaaggacaactcccagtccggctacacgggaaac
gtctacgtggacgcctacaaactggacggaaccaagctgtggcgcatcgatttgggccgc
aacatccgcgccggcgcgcactacacccaggtccttgcgtacgacttcgacggcgacggc
aaagccgaagttgccttcaagacggccgacggcaccaaggatgcggcaggcacggtgatt
ggaaacgccgacgccgacttccgcaacagcgccggatacgttctgtctggtcccgagttc
ctcaccgtcttcaagggtgaaacgggcaccatcctggataccgtggcctacgagcccgag
cgcggcacggtatccagctggggcgacaactacgggaaccgcgtggaccgcttcctggct
ggagtggcgtacctcgacggggaacacccttccatgatgttcagccgtggctactacacc
cgcactgtcctggtcacctatgacctcgtcaacggcaagttccagaagcgctggacgttc
gactccaacgttgccggcgagcagtacaagggccaaggcaaccacaacctgtccgttgtc
gacgtggaccaggacggcaaggacgagttcgtcttcggttccatgaccatcgacgacaat
ggccagccgttgtacaacaccaaacttggccacggcgatgccatccacaccagcgacctg
gacccgtcgaggcccggactggaaacgttcgccgtccacgagagcatgagccagagcggc
aaccgcggggcaactttccgtgatgccgcgacgggcgaggtgttgtggagcatcccagcc
attaaggacacaggccgcggcgctgcgggtgacatcgatccgcgttacgccggggccgag
ggctgggccgttggcggttccgctgcctgggattcgcccgtaggtcagctgatgtccgcc
aagggtgagctgatcgccgaaaagatcccggccgccaacttcctggcctggtgggatggc
gacttgctgcgtgagatcgtggatcacgattacgacgccaccgtgtcccgcggcgttccc
accatttccaagtggaactgggaaacggaaaccagtgaccggctcctgaccgctgcgggc
gcccgcagcaacaacaccaccaagggaaacccatccatccaggctgacatcctgggcgac
tggcgcgaagagatcgcgtggccgtccacggacagctccgagctgcggatctacaccacc
acggctcccaccgaggtccgcctccggacactgatgcacgataccgtctaccgcacagct
gtggctcgggagaacgtggcctacaaccagccgccacacccgagcttcttcatcggtgag
ggcatgcaggcacaggccatgcccgctgtcgtctataccggcaagaagtag
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