Permianibacter aggregans: E2H98_04985
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Entry
E2H98_04985 CDS
T06332
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pagr
Permianibacter aggregans
Brite
KEGG Orthology (KO) [BR:
pagr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagr03019
]
E2H98_04985 (hrpB)
Enzymes [BR:
pagr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E2H98_04985 (hrpB)
Messenger RNA biogenesis [BR:
pagr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E2H98_04985 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
TYW2_N
Flavi_DEAD
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGX39049
LinkDB
All DBs
Position
complement(1083444..1085957)
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AA seq
837 aa
AA seq
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MSVLPIDAVLPELLAALRVQPNVVLSAEPGAGKTTRVPLALLADAAFAPGKILMLEPRRL
AAIRAAEYMAAQLGERVGQQVGYRIRGESKISSATRIEVVTEGILTRMLQDDPSLEGVSV
VIFDEFHERSIHADLGLALTLEAQDALRDELRVLVMSATLDGVAVASLLNDCPVIASSGR
SFPVQTFYAPRPSDYPLEKSIVAVAQRAMNEQEGDLLVFLPGQREIRRAETALRELLQER
VAIHALFGEASISAQQAALKPDAQGRRKIILATAIAETSLTIDGVRVVIDSGLARQSRFD
PRRGMSGLVTTMLSQATAEQRRGRAGRTAPGVCYRLWSESQQQSLARFPTPEILSTDLAP
FALEIAQWGVTDVATLRLLDAPPAAHLQQARDLLQRLQALDHELRLTEHGKTMAALPVHP
RYAHMLLKAREFSQTSLACDIAALLEERDLLRSQQVGFRDVDFHQRWLALQHGGAVDRNA
RERVRAQSARLKKMLRAEDSATDEDFIGPLLALAFPERVCKQRQKQSLRYQSAAGVGLSL
PDGSPLNKCEWLAVAEVDGVGQDARIFLAAEIKESLLRSVLASHIETRIEGFWDEKSDAL
VAREAECIGALIVSEKPVTLNEATRLAAVIAGIRSLGLSVLHWGDKAKSLRERVQWLREQ
AGLDDSDRNRLPDLSDAHLLATLEQWLAPFLSGVTRKAHLQQLDVFPALSALIEFEAMRW
LDAMAPTHLTVPTGTAVKIDYDQHPPVLAVRLQEMFGQMETPTLAKGRVPVMLHLLSPAR
RPLAVTQDLQSFWQNAWQDVRKDMRGQYPKHYWPENPLEAEPTRRSKAADDRARKST
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttttgccgatagatgctgttctgcccgaattattggctgcactgcgcgtacag
cccaatgtcgtgctatcggccgagccgggcgccggcaaaaccacgcgggtgccgctggct
ttgcttgccgatgccgccttcgcgccgggcaaaatcctgatgctggaaccgcgccggctg
gcggcgattcgtgccgcagagtatatggcggcgcagcttggcgagcgggtcgggcaacag
gttggctaccgaattcgtggcgaatcaaaaatctcctcagcgacgcgcattgaagtcgtc
accgaaggcattctgacccggatgttgcaggatgacccatcgctcgaaggcgtgtcggtg
gtgattttcgatgaattccacgagcgctcgattcatgccgatttgggcttggcattgacg
ctggaagcgcaagatgcactgcgcgatgagttgcgcgtgctggtcatgtcagcgacgctc
gatggcgtcgcggttgcttcgctgctgaatgattgcccggtgattgccagctccggtcgc
agctttccggtgcaaacattttacgcacctcgtccgagcgattacccgctggagaagtcg
attgttgccgttgcgcaacgggcaatgaatgaacaagaaggtgatttgctagtgtttctg
ccgggccagcgggaaatccgccgcgctgaaacggcattacgtgaactgctgcaagagcgc
gtcgcgattcatgcgctgtttggcgaagcgagcatcagtgcccaacaggcggcgctgaaa
ccggatgcacagggccggcgcaaaataatcttggccacggcaattgctgaaaccagtttg
accattgatggcgtgcgcgtcgtcatcgattccggtttggcacggcaatcgcgattcgat
ccacgtcgtggcatgtccggtttggtcacgacgatgttgtcgcaagcgaccgccgagcag
cgtcgcggtcgagccggccgcacggcaccgggtgtctgttatcggctgtggagcgaaagc
cagcagcaatccctggcgcgttttccaacgccggaaatcctgagcaccgatttggcgccg
ttcgcgctggaaatcgcccaatggggagtcaccgatgttgccacgctgcgcttgcttgat
gcgccgcctgctgcacatttacagcaagcgcgcgatttattgcagcgcctgcaagctctc
gatcacgagctccgtttgaccgagcacggcaagacaatggcggcattgccggtgcatccg
cgctacgcccatatgctgctgaaagcgcgtgagttttcgcaaaccagtctggcttgcgat
atcgccgcgctgctggaggagcgcgatttgttgcgcagccagcaagtcggttttcgcgat
gttgactttcatcagcgctggttggctttgcagcatggcggcgctgtcgatcgcaacgcc
cgggagcgagtcagagcgcaaagtgcaaggttgaagaaaatgctgcgtgcggaagattca
gcgactgacgaagactttattgggcctttactggcgttggcgtttccggaacgcgtttgc
aaacaacggcaaaaacaatcgctgcgctaccagagtgccgccggtgtcggtttaagtttg
ccggatggatcaccgctgaataaatgcgaatggctggcggtcgccgaagtcgatggcgtt
ggtcaagatgcaaggatttttctcgcggccgagatcaaggaatccttgctgcgcagcgta
ttggcgtcacatatcgaaacgcgtatcgaaggcttttgggatgaaaaatccgacgccctg
gtggcacgcgaagcggagtgcatcggagccctgattgtcagtgaaaagccggtaaccttg
aacgaagcgacgcgattagcagcggtgatcgccggcattcgttcacttggcttgtcggtg
ctgcactggggtgataaagcaaaaagtttgcgggaacgggtgcagtggttacgcgaacag
gccgggctggatgacagtgacagaaatcgcttgcccgatctcagtgacgcgcatttgctg
gcgacactggagcagtggctggcgccgtttttatctggcgttacccgcaaagcgcatttg
caacagcttgacgtgtttcccgcactcagtgccttgatcgaatttgaggcaatgcgctgg
ctcgatgcgatggcgccaacgcatttgaccgtgccgaccggcaccgctgtcaagattgac
tatgaccaacacccaccggtattggcggtacgattgcaagaaatgtttggccaaatggaa
acgccgacgctggcgaaaggcagagtaccggtcatgttgcatttgctgtcgccagcgcgt
cggccgctggccgttacccaggatttgcagagcttttggcaaaacgcctggcaggacgtg
cgcaaggatatgcgtggtcaatacccgaaacattactggccggaaaatccattggaagcc
gagccaacccggcgcagcaaagccgccgatgaccgggcgcgcaaatccacctga
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