Permianibacter aggregans: E2H98_05020
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Entry
E2H98_05020 CDS
T06332
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pagr
Permianibacter aggregans
Brite
KEGG Orthology (KO) [BR:
pagr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pagr03016
]
E2H98_05020 (thpR)
Enzymes [BR:
pagr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
E2H98_05020 (thpR)
Transfer RNA biogenesis [BR:
pagr03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
E2H98_05020 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Acb1
DUF4081
Motif
Other DBs
NCBI-ProteinID:
QGX39056
LinkDB
All DBs
Position
1093630..1094193
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AA seq
187 aa
AA seq
DB search
MGNKRQSSGQQHRVFFALPIDSETSAKLDVWRRAMPITGRMVPTANFHLTLAFIGEIYGS
RLDALMDSRFDGYPPFLLEFGELAYFARAKVLSIAPCAVPEALSRLAARCQQLAQHWGNA
RKEHNYQPHITLARDVEPPVPPASDQMNLSLRCSMVQLLESRPAKQGVYYEVLAEWPLQR
PLRPQPR
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacaaacgccaaagtagcggccaacaacaccgggtatttttcgcgctgccaatc
gacagtgaaaccagcgccaagcttgatgtctggcgccgggccatgccgattaccggtcgc
atggtaccgactgccaatttccatctgacgctggcgtttatcggtgaaatctatggcagc
cggctcgatgcgctgatggacagccgcttcgatggctatccgccgtttctgctggaattc
ggcgagctggcgtatttcgcccgcgcaaaagtgctgagcatcgcaccatgcgcggtaccg
gaagcgctaagccggctggctgcacgctgccagcaattggcccagcactggggcaatgcc
cgcaaggaacacaactaccaaccccatatcacgctggctcgcgatgtcgagcctccggta
ccaccggccagcgaccagatgaacctgagtttgcgctgcagcatggtgcagttgctggaa
agccggccggcgaaacaaggtgtctactacgaagtcctggccgaatggccattacagcgc
cccttgcgtccgcaaccgcgatga
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