Permianibacter aggregans: E2H98_07110
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Entry
E2H98_07110 CDS
T06332
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pagr
Permianibacter aggregans
Pathway
pagr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pagr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E2H98_07110 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagr03021
]
E2H98_07110 (rpoD)
Transcription machinery [BR:
pagr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E2H98_07110 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Serine_rich
DUF7436
DUF4611
Motif
Other DBs
NCBI-ProteinID:
QGX39442
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Position
1543197..1545056
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AA seq
619 aa
AA seq
DB search
MASTDNFEADEQQQSQLKLLIAKGKEQGYLTYAEVNDHLPSDIIDPEQIDDIIRIINDMG
IQVFEVAPDADQLLMSENQPADEDAAEEAAQALATLDKEVGRTTDPVRMYMREMGTVELL
TREGEIEIAKRIEEGLREVLMAVAEYPATSQYLLDEFDRFLAGEVRLPDIISGFIDLNSL
FEEAPTAAAHVGSELSEEELDDEDDDDSAEEEEQDTGPDPEEAKAHFTALREAQEKVMAA
LKKYGRNHKNTEAALSALTDEFLQLKLVPKQFDRLVNRTRKLTDTVRTQERLCMRLACEK
AGMPRKTFIATFPGNETNTKWLDAQLKAKSEYQAKLEHFGEDIRRAQKKLAQIEEDSRLT
IQDIKDLNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM
GREPTPDELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTATESPVDV
AMSESLREATREVLAGLTAREAKVLRMRFGIDLQTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDRLRSFLDE
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcactgacaattttgaagccgatgaacagcaacaatcacagctgaagctgctg
attgccaaaggcaaagagcaaggctacctcacctacgccgaagtcaatgaccacttgcct
tccgacatcatcgatccagaacagatcgatgacatcatccgcatcatcaacgacatgggt
atccaggtattcgaagtcgccccggatgccgaccaactgttgatgtcggaaaaccagccg
gccgacgaagacgccgctgaagaagccgcccaagccctcgccacgctagataaagaagtc
ggccgcaccaccgacccagtgcgtatgtacatgcgcgaaatgggcaccgttgaactgttg
acccgcgaaggcgaaatcgaaatcgccaagcgcatcgaagaaggtctgcgtgaagtattg
atggctgtcgccgaatatccggccacctcgcaatatctgcttgatgaattcgatcgtttc
ctggctggcgaagtacgtctgccagacatcatttccggctttatcgatctgaacagcctg
ttcgaagaagccccaaccgctgccgcgcacgtgggctcggaattgagcgaagaagagctc
gacgacgaagacgacgatgacagcgccgaagaagaagaacaagacaccggcccggatccg
gaagaggccaaagcccacttcacggccctgcgcgaagcgcaggaaaaagtgatggcggcg
ctgaaaaaatacggccgtaaccacaagaacactgaagccgccttgagcgcgctgaccgat
gaattcctgcagttgaaactggtgccgaagcaattcgatcgcctggtcaaccgcacccgc
aagctgaccgacaccgtgcgcacgcaagagcgtctgtgcatgcgtttggcttgcgaaaaa
gccggcatgccgcgcaaaacctttatcgcgaccttccctggcaacgaaaccaacaccaag
tggctcgatgcccaattaaaagcgaaatcggaatatcaggccaagctggaacatttcggt
gaagacattcgccgcgcccagaaaaaactggcgcaaatcgaagaagacagccgcctgacc
attcaggacatcaaagaccttaaccgtcgcatgtcgatcggcgaagcgaaagcccgccgc
gccaagaaagaaatggtcgaagcgaacttgcgtctggtgatctcgattgccaagaaatac
accaaccgtggtctgcagttcctcgatctgattcaggaaggcaacatcggcttgatgaaa
gccgtcgataaattcgaataccgccgcggttacaaattctcgacttacgcgacctggtgg
attcgtcaggccatcacccgttcgatcgccgaccaggcgcgcaccatccgtattccggtg
cacatgatcgaaacgatcaacaagctgaaccgcatttcccgccaaatgctgcaggaaatg
ggtcgcgagccgaccccggatgagttggccgaacgcatgcaaatgccggaagacaaaatc
cgcaaagtgctgaagatcgccaaagaaccgatttcgatggaaaccccaatcggtgacgat
gaagattcgcatctgggcgatttcatcgaagacaccgccaccgaatccccggtcgatgtc
gcgatgagcgagagcttgcgtgaagccacccgcgaagtgctggcaggcctgactgcccgc
gaagcgaaagtgctgcgtatgcgtttcggtatcgacctgcaaaccgaccacacgttggaa
gaagtcggcaagcaattcgacgtcacccgcgagcgtatccgtcagatcgaagccaaggcc
ctgcgcaaactgcgtcacccgagccgctccgatcgcctgcgcagcttcctcgacgagtaa
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