Porphyromonas asaccharolytica: Poras_0310
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Entry
Poras_0310 CDS
T01485
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pah
Porphyromonas asaccharolytica
Pathway
pah03410
Base excision repair
pah03430
Mismatch repair
pah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Poras_0310
03430 Mismatch repair
Poras_0310
03440 Homologous recombination
Poras_0310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pah03400
]
Poras_0310
DNA repair and recombination proteins [BR:
pah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Poras_0310
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Poras_0310
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Poras_0310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
AEE12264
UniProt:
F4KME5
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All DBs
Position
381196..382977
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AA seq
593 aa
AA seq
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MTNEWQYTPFTREEEVGGSQLAHALRIPAVAGRLLYRRGIRTEADAQRFFHPSLEDLHDP
FLMQDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPG
RDDEGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLP
DAAAVLDPKRPDCHYPFEELCGCGVAFKFMQAFGMNNGFPSASLFKLLDLVAVSIAADLV
SVMDENRILAHYGLRQLNRNPSMGLKGIIKTCGLEGRKITMSDIIYKIGPRINASGRMMN
GREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEAMQLLQVNPELAHQPIVVLY
QPDWHKGVIGIVASRVAEYTNRPTIVLTGTSDRIVGSARSVGGIDIYSIIEEARDLLLNF
GGHTYAAGLTLLPDKLPDFRAYIQGVNAVTTSDRAQSTPIEIDAEIELREVTQRLYTTIQ
RFAPYGPDNYPPLFVTQQLYDGGASRAVGRNSEHFKVDAIPTLGSKKHCPGIAFNQAPAF
RFMKKSSAGRAIAPFALVYQIDENHFNGIVSLQLLIKDVKPQRPGEDLFASQR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgaatggcaatacactcccttcacccgagaggaggaggtgggtggctctcaa
ctggcgcatgccttgagaatacccgctgtggcgggacgcctactctatcgtcgcggtata
cgtacagaagcagatgcacagcgattctttcacccatcgctagaggatctgcacgacccc
tttctgatgcaagatatggatctggcggtcaagcgtctcaacaaggcgctaggacgcaag
gagcatatcatgatatacggcgactacgatgtagatggcactacagcagtatcactaatc
tataagtacctccgctcggcggggtgcagcgagcacctgctgagctactatatcccagga
cgggacgatgagggctacggcgtatcctatcggggcgtggatcatgcccatgagataggc
gcgacgctgatcatcgtggtggattgtggcatcaaggctatcaacgagatagcctatgct
aagacgttggggatagactttatcatctgcgatcaccaccaccctgacgaccagctgccc
gatgccgcggccgtcctagaccctaagcgaccagactgtcactacccctttgaggagctc
tgtgggtgtggcgtcgcgtttaagtttatgcaggcctttgggatgaataatgggttcccc
tcggcttcgctctttaagctcctagacctggtcgctgtgagtattgcagctgatctggtc
tctgtgatggatgaaaatagaatcttggcgcactatggactccgtcagctcaatcgcaat
ccctcgatggggctcaaggggatcatcaagacttgtggtctcgaagggcgtaagatcacg
atgtccgacatcatctacaagatcgggccgaggatcaacgcctcgggacgtatgatgaat
ggccgcgaggcggtcgatctgctcctgagcaatgatgctaagacgacagcccgcatgagc
gagctgatcgatgagtacaacgtgcgtcgtcgcgagctagaccgctctacgaccgacgag
gctatgcagctcctacaagtcaatcctgagctggcacatcagcccatcgtagtcctctac
cagcctgactggcacaagggggtcataggaatcgttgcctctcgtgtggcggagtatacc
aatagaccgacgatcgtgctgactggcacgagcgaccggatcgtgggctcggcgcgaagt
gtcggcgggatagacatctacagcatcatcgaggaggctagagatctgctcctaaacttc
ggtgggcacacctatgctgctgggttgacactcttgccggacaagctacccgacttccgc
gcttacatacagggagtcaatgccgtgacaactagtgatcgagcacagtccacaccgata
gagatcgatgccgagatagagcttcgtgaggtgacgcagagactctacacgacgatacag
cgctttgctccgtatggaccggacaactacccgccgctctttgtgacacagcaactctat
gacggaggggctagcagagctgtgggacgcaatagcgagcactttaaggtagacgctata
cctacactgggatccaagaagcattgcccagggatagccttcaaccaagcacccgccttc
cgctttatgaagaagtcttcggcaggaagagcaattgcaccctttgcccttgtctaccaa
atagatgagaaccactttaacggaattgtctccctacagttactgatcaaggatgtcaag
ccacaacgacctggagaggacctctttgcctcccagcgatga
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