Paenibacillus sp. IHB B 3084: ASL14_11685
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Entry
ASL14_11685 CDS
T05348
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paih
Paenibacillus sp. IHB B 3084
Pathway
paih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASL14_11685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paih03400
]
ASL14_11685
Enzymes [BR:
paih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASL14_11685
DNA repair and recombination proteins [BR:
paih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASL14_11685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ALP36722
UniProt:
A0A0S2S556
LinkDB
All DBs
Position
complement(2561397..2564924)
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFTKDADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPILVMTHN
MFAAQKIADDLQEALPPERVLLYPSNELVAAEAAISSPETLSQRIEVLIRCAQGFRGIVV
VPFSGVRRLLPLPETWREARIELKEGETIQLETFLLHMVEMGYQRVERVESRGEMSVRGG
IIDFYPMTTRWGYRVELFDDEIDSIRMFDPQDQRSVEKVQEVIVTPCKEVIADSARMDQA
ADAAAILLEEQLGKMTDRQAKLHLKEEIHREIELLREHVYFDEIYKYISLLYPERKTLAD
YMPEDTILIIDEPARMLETAKQLERDESEWNLHLLQNGKTLPQLELSDNADNLLYNRRFQ
TLFLSIFLRQVPHTQPQNILNFICRGMQDFHGQMNVLKAEMDRWRKAGTQVMMLASGDER
LDRMRRVLQDYGIDEPTMAIGNLQSGFEMPSIHLAVITEGEMFSQKQRKARKQGRHVDNA
ERIKSYSELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKIYKLGGNEWIRVKSKVRSSVQDIADDLIKLYAERQSAPGFAFEKDSP
EQQEFEDMFPYEETRDQIRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNETIKGVRQGTVDIVI
GTHRLLSQDLVFKDLGMLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE
INALVPDAKVGVGHGQMSESELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDLSNRNWSTSIDLG
VDAYLPGDYIYDSIQKIEIYKKVAAVSTFDEAMELEDELVDRFGDLPEAVRHLLAVARLK
VYGRMYGIESIVQRDDNIVLKFHEGRQQAVQTAKLAEIGNRFERRVQFEQGTPMSARIKG
RGLDDPQILELLEQFLSALKDAFTLKEELQNVTTK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttattcaggcttttaccaaggatgctgattatgcatccattgcagca
ggtatatcatcaggcatgaaggaacagctcatatctggtttgtcgggctcttcccgacag
gtactgatggccgcgcttgccgaagataccggacgaccgatcctggtcatgacgcacaac
atgtttgccgctcaaaaaatagcagatgatttgcaggaagcgcttcctcctgaacgggtt
ttgttgtacccctcgaatgagctggtggctgctgaagccgccatatccagcccggagacg
ctatcccaacgaattgaagtattgatacgatgcgcccagggttttcgtgggattgttgtc
gtgccgttttctggtgtccggcgtttgctgccgcttccagagacgtggcgtgaagcccga
atcgagctaaaagaaggcgaaacgatccaactggagacatttttgctgcatatggtcgag
atggggtaccagcgggtggagcgtgtagagtcacgtggagagatgagtgtccgtggcggg
attatcgatttttatccgatgacaacccgttggggctaccgcgtggagctgttcgatgat
gaaattgactccatccgtatgttcgacccgcaagatcagcgttcggtggaaaaggtacag
gaagttatcgtaacgccgtgtaaggaagtcatcgcggatagtgctcgtatggatcaggcg
gcagatgccgctgcgattctgttggaggagcagctcggcaaaatgacagaccgtcaggcc
aagctgcatctgaaagaggagattcaccgcgaaattgagctgctgcgtgagcatgtgtat
tttgacgaaatctataaatatatctcgttgttgtatcccgaacgcaaaaccttggcagat
tacatgccggaagacaccattctgatcattgacgagccggcgcggatgctggaaacagcc
aagcagcttgaacgggatgagtccgagtggaatttgcatttgcttcaaaacggtaaaacg
ttaccgcagctagagctgtcggataacgcggacaatctgctgtataaccggagattccaa
acgttgttcctgtcgatcttcctccgtcaggttccgcatacacagccgcaaaatattttg
aatttcatctgccggggcatgcaggatttccacggtcaaatgaatgtgctcaaggcggaa
atggatcgctggcgcaaggcgggcacacaggttatgatgctggcgagtggggacgagcgg
ctggatcggatgcgccgggtgcttcaggattacggtattgatgagccaacgatggctatc
ggcaatttgcaaagtggttttgagatgccatctattcatttggcagtgattaccgagggc
gaaatgttctcgcaaaagcagcgcaaagcacgcaagcagggccgccatgtggacaacgca
gagcggattaagagctatagcgagctgaaggtgggcgactatgtcgtacaccagaatcac
gggatcgggaagtacatggggatcggtacgctggaggttggcggtatccataaggattac
atgcacattctctatgcgggcggcgataagctgtctgtaccgattgagcagattgaccta
attcagaagtatgtcggctcagaggacaaggaacctaagatttacaagctgggcggaaat
gaatggatacgggtgaagagcaaggttcgcagctcggttcaggacattgctgatgatttg
atcaagctgtacgcagaacggcagtcagcgccgggttttgcttttgaaaaggattcaccg
gaacagcaggaatttgaggatatgttcccgtatgaagagacacgtgaccagattcgggca
attgaagagatcaagaaggacatggagcagagccgtccgatggatcgtttgctgtgtggt
gatgtgggctacggcaagacagaggttgccatccgcgctgcgtttaagtcggctattgag
ggcaagcaggtggccgtgttagtaccgacgacgattttggcacagcagcattatgagacg
ttccgtgagcgcttttccgggtatccgttcaacattcaggtgttgagccgtttccgttcg
cgcaaggagcagaatgagacgattaaaggggttcgtcaggggacggtcgatattgtcatt
ggcacccatcgcttgttgtcgcaggatctggtgtttaaggatctggggatgctcattgtc
gatgaggagcagcggtttggcgtgacgcataaggaaaagctgaaaaagctgaaaacgaat
gtggacgtgctgacgttaacggctacgcctatcccgcgtacgctacatatgtctatgctc
ggggttcgcgatttgtcggtcattgagacaccgccggaaaaccgttttcccgtgcagact
tatgttgtcgagcacagccagacgttggtgcgtgaggcgattgaacgcgagatggcacgc
ggaggacaggtgtactacctgtataatcgcgtacagggtattcaggaaatggctgccgag
atcaatgcgcttgtgccggatgccaaggtgggcgtgggtcatggtcagatgtccgaatcc
gagctggagaagaccattttggacttcctggacggtgaatacgatgtactggtcagcacc
agcattattgagacgggggtagatattccgaatgtgaatacactcatcgtgcatgatgcc
gataaaatggggttgtcccagctttatcagctgcgtgggcgtgtaggccgttccaaccgg
attgcctatgcttattttacgtaccagcgggataaggtgttgacggaagtggcagagaag
cgccttcagtcgatcaaggagtttacggagttgggctccgggttcaagatcgcgatgcgc
gatttgtcgattcgcggagcggggaatttgctcggtgcagagcagcacggattcattgca
tccgtcggttttgacctttactcgcaaatgctggctgaggaaattaataaacgtaaggtt
agcgtacttggagaagaagatctgtcgaatcgaaattggagtacgtccattgatttgggc
gtggatgcttacctgccaggagattatatttacgacagtattcagaagattgagatttat
aaaaaggtcgcggcagtcagcacgtttgacgaggctatggagctggaggatgagctggtc
gaccgctttggcgacttgccggaggctgtgcgtcatttgctggctgtggcccgtctcaag
gtgtacggacgcatgtatggcattgagtccattgtccagcgggatgacaacatcgtgttg
aaattccacgaagggcgccagcaggcggtacagaccgccaaacttgcggagattggcaat
cgctttgaaagacgtgtacaatttgaacagggcactcctatgagtgcacgcatcaaaggc
agaggtctggatgatccacagatactagagctgctggagcaatttttgagtgcactaaaa
gatgcattcacattgaaggaggaactgcaaaatgtcacaaccaaataa
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