Paenibacillus sp. IHB B 3084: ASL14_12345
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Entry
ASL14_12345 CDS
T05348
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paih
Paenibacillus sp. IHB B 3084
Pathway
paih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASL14_12345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paih03019
]
ASL14_12345
03009 Ribosome biogenesis [BR:
paih03009
]
ASL14_12345
Enzymes [BR:
paih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ASL14_12345
Messenger RNA biogenesis [BR:
paih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASL14_12345
Ribosome biogenesis [BR:
paih03009
]
Prokaryotic type
rRNA helicases
ASL14_12345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
AAA_19
AAA_22
ERCC3_RAD25_C
DUF6026
Motif
Other DBs
NCBI-ProteinID:
ALP36833
UniProt:
A0A0S2S560
LinkDB
All DBs
Position
complement(2691908..2693353)
Genome browser
AA seq
481 aa
AA seq
DB search
MSQKHFSDYPLSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGI
PLCELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELK
QRTHVAVGTPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPDDRVT
MLFSATFPEDVATLSRKYMNKPVEIEIKATGITTATIDHSLIQVKESDKLALLQDLLIVE
NPDSCIIFCRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATD
VAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLVTPKDSKRLADIEAY
IGFAIPNVKAPSEEAVDLRREDFEQKLHVRTELKKDKREQLNQQIMKLNFNGGKKKKLRA
VDFVGTIAKLDGVSADDIGIITILDNVTDVEILNGKGPLVLEIMKNTTVKGKLLKVRKGN
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaagcatttttcagattacccattaagtgaagaaattgtgcgagcgctgaat
agcttgggttatgagacgcccaccgaaattcagacggaagtcattccagttgcgcttgaa
aagaaggatcttgtcgccaaatcgcaaacaggtagcggcaaaacagcggcatatggtatt
ccactttgcgagttagtagattggaatgagaataaaccccaagctttaatcctgacgcca
acccgtgaactcgcattacaggtcaccgaagacatcacgaatattggacgctttaagcgg
ataaaagcaacgcccctttatggcaagcatccttttcatatacaaaaggccgagttaaag
caaagaacgcatgtcgctgtaggtacgccaggacgtgtactagaccatattgaacgaggc
acgctatcgttagatcggattgcctatctcgtgattgatgaggctgacgaaatgctgaat
atgggctttatcgagcaagttcagtccatcatccaggctctgcctgatgacagggttacg
atgttattctccgctaccttccctgaggatgtggccacactgtcacgtaaatatatgaac
aagcctgttgaaattgaaattaaagcgaccggtataacgaccgccacaattgatcactct
cttattcaggtgaaggagtcggacaagctggcactgctgcaagatctgctcattgttgag
aatcctgacagctgcattattttctgtcgtacgcaggagaatgtagatacattattcaga
gcattggctgatcttgaatatccatgtgatcgcattcatggtggtatggagcaggatgag
cgatttgaggtgatgaatgcgttcagaagggggcagttccgttacttgatcgcgacagat
gttgccgcaagggggatcgacatcaccaatatcacccatgtcattaactacgatattcca
cttgagaaggaaagctatgttcatcgcacgggacgtacgggacgtgcaggcaagacaggg
aaagccattaccctggtcactcctaaggatagcaaacgattagccgatattgaagcatat
attggattcgcgattccgaacgtaaaagctccctcagaagaggctgtggatctccgtaga
gaagattttgaacagaagctacatgtcagaactgaactcaaaaaagataagcgcgagcaa
ttaaaccaacagattatgaagctgaacttcaatggcggcaagaagaagaaactcagagct
gtcgactttgttgggacaatcgctaagctggacggggtaagcgcagacgatatcgggatt
attacgattcttgataatgtgacagatgttgagattctgaatggcaagggcccactggta
ctggagattatgaagaatacgaccgtaaaagggaagctgttaaaggtgcgtaaggggaat
aggtag
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