Paucibacter sediminis: PFX98_10190
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Entry
PFX98_10190 CDS
T10150
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pais Paucibacter sediminis
Pathway
pais03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pais00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFX98_10190 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pais03021
]
PFX98_10190 (rpoB)
03400 DNA repair and recombination proteins [BR:
pais03400
]
PFX98_10190 (rpoB)
Enzymes [BR:
pais01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFX98_10190 (rpoB)
Transcription machinery [BR:
pais03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFX98_10190 (rpoB)
DNA repair and recombination proteins [BR:
pais03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFX98_10190 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF8806
Motif
Other DBs
NCBI-ProteinID:
WIT13968
UniProt:
A0AA95NK65
LinkDB
All DBs
Position
2228769..2232890
Genome browser
AA seq
1373 aa
AA seq
DB search
MAQATPYSYTERKRIRKSFGKRESVLNVPYLLTMQKDSYVAFLQKDVPPAKRKPEGLQAA
FLSAFPIVSHNGFVEMKFLEFNIAKPPFDTRECQQRGLTYAAAVRAKLQMIIYDRESPQA
KTVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLL
FSARIIPYRGSWLDYEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILAHFFVFDNFR
LMDSGAQMEFVADRLKGEVARFDITDKSGAVIVEKDKRITARHVRQLEQSGTQHVTVPED
FLLGRVLAKNMVDGDTGEIIAKANEELTEALLKKLRSAGIKEIQALYTNELDEGAYISQT
LASDETDSQLAARVAIYRMMRPGEPPTEDAVEALFNRLFYSEDTYDLSRVGRMKFNARVG
RDTPEGAMTLSNEDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLAR
IEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFAQLNEYGFLETP
YRRVVDGKVTTQIDYLSAIEEGKYVIAQANATLNAAGELTDELVSARENGESVLTSPERI
QYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKALVGTGVERVAAK
DSGTVVAARRGGIVDYVDTNRIVIRVNDDETVAGEVGVDIYNLIKYQRSNQNTNIHQRPI
VRRGDKVAAEDIIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTS
IHIEELVVMARDTKLGSEEITRDIPNLSEQQLARLDESGIVYIGAEVNPGDVLVGKVTPK
GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQIID
DELKRFRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKIAKGTVIDKAYLAGVEKFHW
FDIRPAEDEVANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK
RRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQVLEVHL
GWAGKGIGLRIGDMLQQHSAVAELRKFFDELYNQSGGKAESLDELSDKEIVEMAQNLSNG
VPFATPVFDGAKEEEIRGMLKLAYPDDIAAKKGLTPTRTQAFLYDGRTGEQFERPTTIGY
MHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQE
MLTVKSDDVNGRTKVYENIVKGEHAIDAGMPESFNVLVKEIRSLGIDIELERN
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagcaaccccctatagctataccgagcgcaagcgaatccgcaagagcttcggc
aagcgtgagagcgttctcaacgttccctatttgctcaccatgcagaaggactcgtacgtc
gccttcctgcaaaaagacgtcccccctgccaagcgcaagcccgaaggcctgcaagcagcg
ttcctttccgcgttcccgattgtttcgcacaacggtttcgtggaaatgaagttcctcgaa
ttcaatatcgccaagcccccgttcgacacccgtgagtgccagcagcgcggcttgacctat
gcagcggccgtgcgcgccaagctgcagatgatcatttacgaccgtgagagcccgcaggcc
aagacggtcaaggaaatcaaggaacaagaggtctacatgggcgaagtgcccctgatgacc
gattacggttccttcatcgtcaatggcaccgagcgtgtcatcgtcagccagctgcaccgc
tcgcccggcgtgttcttcgagcacgacaagggcaagacccactcgtccggcaagctgctg
ttctcggcccgcatcattccctaccgcggctcctggctggactatgagttcgacccgaag
gacatcctgtacttccgcgtcgaccgtcgccgcaagatgccggtcaccatcctgctcaag
gccattggcctgaaccccgagcagatcctggcccacttcttcgtgttcgacaatttccgt
ctgatggactccggtgcccagatggagttcgtggccgaccgcctgaagggcgaagtggcc
cgctttgacatcaccgacaagagcggtgccgtcatcgtcgagaaggacaagcgcatcacc
gcccgccacgtgcgccagctggagcaatccggcacgcagcatgtgaccgtgcccgaagac
ttcctgctcggccgcgtgctggccaagaacatggtcgacggcgacaccggcgagatcatc
gccaaggccaacgaagagctgaccgaagcgctgctgaagaagctgcgcagcgccggcatc
aaggaaatccaggcgctctacacgaacgagctggacgagggtgcctacatcagccagacc
ctggcctcggacgagaccgacagccagctggccgcacgcgtcgcgatctatcgcatgatg
cgccccggcgagccgcctacggaagacgcggtggaagcgctgttcaaccgcctgttctac
agcgaagacacctacgacctctcgcgcgtgggccgcatgaagttcaacgcccgtgtgggc
cgcgacacgccggaaggcgccatgaccttgtcgaacgaggacatcctcgacgtcgtcaag
atcctggtggagctgcgcaatggccgtggcgaagtcgatgacatcgaccacctgggcaac
cgccgcgtgcgttgcgtgggcgagctggccgagaaccagtaccgctcgggcctggcgcgt
atcgagaaggccgtgaaggagcgtctgggccaggccgagaccgaagccctgatgccgcac
gacctgatcaactccaagccgatctctgcggccctgaaggagttcttcggtgcctcgcag
ctgtcgcagttcatggaccagaccaaccccctgtcggaaatcacgcacaagcgtcgcgtt
tccgccctgggcccgggtggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtg
caccccacccattacggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgctggcgctgttcgctcagctcaacgagtacggcttcctggaaacgcct
taccgtcgcgtcgtcgatggcaaggtgacgacccagatcgactacctctcggccatcgaa
gaaggcaagtacgtgatcgcccaggcgaacgcgacgctgaacgccgctggcgagctgacc
gacgagctggtgtctgcgcgtgaaaacggcgaatcggtgctgacctcgcccgagcgcatc
cagtacatggacgtggcgccgacacagatcgtctcggtggccgcctcgctcgtgcccttc
ctggagcacgacgatgcgaaccgcgcattgatgggcgccaacatgcagcgtcaggccgtg
ccggtgctgcgtcccgagaaggccctggtcggtacgggcgtcgagcgcgtcgccgccaag
gactcgggcaccgtggtggccgcacgccgcggcggtatcgtcgactacgtggacacgaac
cgcatcgtgattcgcgtgaacgacgatgagaccgtggctggtgaagtcggtgtcgacatc
tacaacctgatcaagtaccagcgttccaaccagaacaccaacatccatcagcgcccgatc
gtgcgccgtggcgacaaggtggctgcggaagacatcattgctgacggtgcatcgacggac
atcggcgagctggccctgggccagaacatgctggtcgccttcatgccctggaacggctac
aacttcgaagactcgatcctgatctccgaacgcgtggtggccgaagaccgctacacctcg
atccacatcgaggagctggtggtgatggcccgtgacaccaagctgggcagcgaagaaatc
acccgcgacatcccgaacctgagcgagcagcaactggcgcgcctggacgaatcgggcatc
gtctacatcggcgccgaggtgaaccctggcgacgtgctggtgggcaaggtcacgcccaag
ggcgagaccacgctgacgccggaagagaagctgctgcgcgccatcttcggcgagaaggct
tccgacgtgaaggacacctcgctgcgcgtggatcagggcaccaacggtaccgtgatcgat
gtgcaggtcttcacccgcgaaggcatccagcgtgacaagcgcgcccagcagatcatcgac
gacgagctgaagcgcttccgcctggacctgaacgaccagctgcgcatcgtcgaggccgac
gccttcgaccgtatcgagaagctgctgaacggccgcgtggccaacggcggcccgcagaag
atcgccaagggcacggtcatcgacaaggcctatctggccggcgttgagaagttccattgg
ttcgacatccgtccggccgaagacgaggtcgccaaccagctggaatcgatcaagaactcg
ctggagcagacccgccacagcttcgacctggcgtttgaagaaaagcgcaagaagctgacg
cagggcgacgagctgccggccggcgtgctgaagatggtcaaggtctacctggccgtgaag
cgccgcctgcagcctggcgacaagatggccggccgtcacggcaacaagggtgtggtgtcc
aagatcaccccgatcgaagacatgccctatatggccgacggcacgcccgccgacatcgtg
ctgaatccgctgggcgtgccctcgcggatgaacgtgggtcaggtgctggaagtccatctg
ggctgggccggcaagggcatcggcctgcgcatcggcgacatgctgcagcaacactcggcc
gtggccgagctgcgcaagttctttgacgagctgtacaaccagagcggcggcaaggccgag
agcctggacgagctgagcgacaaggaaatcgtcgaaatggcgcagaacctgtcgaacggc
gtgcccttcgcgacgccggtgttcgacggtgccaaggaagaagaaatccgcggcatgctg
aagctggcctacccggacgacatcgcggcgaagaagggcctgaccccgacgcgcacgcag
gccttcctgtacgacggccgcaccggcgagcagttcgagcgcccgaccaccatcggctac
atgcacgtgctgaagctgcaccacttggtggacgacaagatgcacgcccgttcgaccggc
ccgtactcgctcgtcacgcagcagccgctgggtggtaaggcgcagttcggtggccagcgc
ttcggtgagatggaagtgtgggccctggaagcctatggcgcgtcctacgtgctgcaggaa
atgctgaccgtcaagtccgacgacgtgaacggccgtaccaaggtctacgagaacatcgtc
aagggtgagcacgcgatcgatgccggcatgccggagtcgttcaacgtgctggtgaaggaa
attcgttcgctcggcatcgacatcgagctcgagcgcaactaa
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