Paucibacter sediminis: PFX98_10195
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Entry
PFX98_10195 CDS
T10150
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pais Paucibacter sediminis
Pathway
pais03020
RNA polymerase
Brite
Enzymes [BR:
pais01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFX98_10195 (rpoC)
Transcription machinery [BR:
pais03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFX98_10195 (rpoC)
DNA repair and recombination proteins [BR:
pais03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFX98_10195 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WIT13969
UniProt:
A0AA95SYW2
LinkDB
All DBs
Position
2232912..2237129
Genome browser
AA seq
1405 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYDAKRVEYGDEFIALM
GAEGVKKLLEDMDLDVEIDKLRNDMTGSELKVKKNSKRLKVMEAFKKSGIKPNWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRDRINAKGEGLVFSDVSEMLRALENGVV
EITAKIAVRLTEYSKGADGEWVPETKLVDTTVGRALLSEILPKGLPFSNINKALKKKEIS
RLINTSFRKCGLKETVVLADKLLQSGFKLATRAGISIAIDDMLVPKEKVQLIERAEKEVK
EIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMTQLSKQKTIDRNGKEVDQESFNSI
YMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKG
LADTALKTANSGYLTRRLVDVTQDLVVTEADCGTDNGIAMRALVEGGEVIESLRDRILGR
VAAIDVLHPETQGLLLPAGHMLDEDNLDMLEQAGVDEVKVRTPLTCATRFGLCAKCYGRD
LGRGGLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSDGIIGFNA
TMRYVTNGKGELVVISRSGEIIISDQHGRERERHKVPYGAILNIKADQTIKAGLILANWD
PLTRPIITEFAGQAKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLLD
ANGNEVKIPGTDHSVTIGFQVGSLIQIRDGQDLAPGEVLARIPVEGQKTRDITGGLPRVA
ELFEARSPKDAGVLAEQTGTVSFGKETKGKVRLEITDPDGNKHEELVPKEKNILVHEGQV
VNRGELIVDGPADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRR
VQITNSGDSNYIVNEQVERSELLDTNDRLRKEGKMIATHADVLLGITKASLSTDSFISAA
SFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHDARRVKEEMDDAERRAI
AMQEAEEMAAAQLAAVDDASDRSAD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtttgctggacctgttcaagcaattcacgcccgacgagcacttcgacgcgatc
aagatcgggctggcctcgcccgagaagatccgttcgtggtctttcggtgaggtgaagaag
cccgagaccatcaactaccggactttcaagcccgagcgtgatggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaaatgcggcgttgaagtcacccagaccaaggtgcgtcgcgac
cgcatgggtcacatcgacctggccgcaccctgcgctcacatctggttcctgaagtcgctg
ccctcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
tttgaagcctatgtggtcgttgaccccggcatgaccccgctgaagaagttcagcatcatg
agcgaggacgactacgacgccaagcgcgtcgagtacggtgacgagttcatcgcgctgatg
ggtgcggaaggcgtcaagaagttgctggaagatatggatctcgacgttgagatcgacaag
ctccgcaacgacatgaccggctccgagctcaaggtcaagaagaactccaagcgcctgaag
gtcatggaagccttcaagaagtccggcatcaagccgaactggatggtgctggacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggtggccgcttcgcgacc
tcggatctgaacgatctgtatcgccgcgtcatcaaccgcaacaaccgcctggcccgtctg
ctcgagctgaaggcccctgagatcatcgtgcgcaacgaaaagcgcatgctgcaggaagcc
gtggactcgctgctggacaacggccgtcgtggcaaggccatgaccggcgcgaacaagcgt
gccctcaagtcgctggccgacatgatcaagggcaagagtggtcgcttccgtcagaacttg
ctgggcaagcgcgtcgactattccggtcgttcggtgattaccgtgggcccgacgctgaag
ctgcatcagtgcggtctgcccaagctgatggcgctggagctgttcaagcccttcatcttc
tcgcgcctggaggcgatgggtatcgccaccaccatcaaggccgcgaagaaggaagtcgaa
tccggcacgccggtggtctgggacatcctggaagaggtcatcaaggagcatccggttctg
ctgaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgagccggtgttgatc
gaaggcaaggcaatccagctgcatccgctggtctgcgcggccttcaacgccgacttcgac
ggtgaccagatggccgtccacgtgccgctgtcgatcgaggcacagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcttcgggcgagccctccatcgtgccg
tcgcaagacgtggtgctgggcctgtactacgccacccgcgatcgcatcaacgccaagggc
gaaggcctggtgttctccgacgtcagcgaaatgctgcgcgcgctggagaacggcgtggtc
gagatcaccgccaagatcgccgtgcgcctgaccgagtacagcaagggtgcggacggtgaa
tgggtgcccgagaccaagctggtggacaccaccgtcggccgtgccctgttgagcgagatc
ctgcccaagggcctgccgttctcgaacatcaacaaggcgttgaagaagaaggaaatctcg
cgcctgatcaacacctcgttccgcaagtgcggcctgaaggaaaccgtggtgctggcagac
aagctgctgcaatccggtttcaagctggccacgcgcgcgggcatctccatcgccatcgac
gacatgttggtgcccaaggagaaggtgcagctgatcgagcgtgccgaaaaggaagtcaag
gaaatcgagcagcagtacgtctcgggcctggtgaccgccggcgagcgctacaacaaggtg
gtggacatctggggcaagaccggcgacgaagtcggcaaggtcatgatgacccagctgtcc
aagcagaagaccatcgaccgcaacggcaaggaagtggatcaggagtccttcaactccatc
tacatgatggccgactcgggtgcccgcggttctgcggcccagattcgccagctggctggt
atgcggggcctgatggccaagccggatggctcgatcatcgagacgccgatcacggcgaac
ttccgcgaaggcctgaacgtgttgcagtacttcatctccacccacggtgctcgtaagggc
ctggcggatacggcgttgaagaccgcgaactcgggttacctgacgcgtcgtctggtggac
gtgacccaggatctggtcgtgaccgaagccgattgcggcaccgacaacggcatcgcgatg
cgcgccctggtcgagggtggtgaagtgatcgaatcgctgcgcgaccgcatcctcggccgc
gtggcagccatcgatgtgctgcaccccgagacgcaaggcctgctgctgccggccggccat
atgctggacgaagacaacctggacatgctggaacaagccggcgtggacgaggtcaaggtc
cgcacgccgctgacctgcgccacgcgcttcggcctctgcgccaagtgctatggccgcgat
ctgggccgcggcggcctagtcaacaccggcgaggccgtgggcgtgattgctgcgcagtcg
atcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcggcttcg
cgtgcagcggtggcctccagcgtcgaagccaagtcggacggcatcatcggcttcaatgcc
acgatgcgctacgtcaccaacggcaagggtgaactggtggtgatttcgcgttccggcgaa
atcatcatcagcgaccagcatggccgcgagcgcgagcgtcacaaggtgccgtacggcgcg
atcctcaacatcaaggccgaccagaccatcaaggctggcctgatcttggcgaactgggat
ccgctgacccgacccatcatcacggaattcgccggtcaggcgaagttcgagaatgtggaa
gagggcgtcaccgtggccaagcaggtcgacgaggtgaccggtctgtccacgctggtggtg
atcgatccgaagcgtcgtggcgccgccaaggtggtgcgcccgcaggtcaagctgctggac
gccaatggcaacgaggtgaagatccccggtaccgaccactcggtgacgattggcttccag
gtcggctcgctgatccagatccgcgacggtcaggacctcgcgcctggtgaagtgctggcg
cgtatcccggtggaaggccagaagactcgagacattaccggcggtctgccgcgtgtggcc
gagctgttcgaagcccgctcgcccaaggatgccggcgtgctggccgagcagaccggtacg
gtctccttcggcaaggaaaccaagggcaaggtgcgcttggagatcaccgatccggacggc
aacaagcacgaagagctggtgcccaaggaaaagaacatcttggtgcacgaaggccaggtg
gtcaaccgcggtgagctgattgtggacggcccggccgatccgcaagacatcctgcgcctg
ctgggtatcgaagagctggctcgctacatcgtcgacgaagtgcaggacgtgtatcgcttg
cagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgtcgc
gtgcagatcacgaactcgggcgactcgaactacatcgtcaacgagcaggtggaacgctcg
gaactgctggacaccaacgaccgtctgcgcaaggaaggcaagatgattgccacccatgct
gacgtgctgctgggtatcaccaaggcttcgctgtcgaccgactccttcatctcggcggct
tccttccaggaaaccacccgcgtgctgaccgaggctgccatcatgggcaagcgcgacgag
ctgcgtggcctgaaggaaaacgtcatcgtcggccgtctgatcccggccggtactggcatg
gccttccacgatgctcgccgcgtcaaggaagagatggacgacgccgagcgccgcgccatc
gccatgcaggaagccgaggaaatggctgcagcgcagttggccgccgtggacgacgcgagc
gatcgcagcgccgactga
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