Paucibacter sediminis: PFX98_10930
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Entry
PFX98_10930 CDS
T10150
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pais Paucibacter sediminis
Pathway
pais03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pais00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFX98_10930 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pais03019
]
PFX98_10930 (pnp)
03016 Transfer RNA biogenesis [BR:
pais03016
]
PFX98_10930 (pnp)
Enzymes [BR:
pais01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PFX98_10930 (pnp)
Messenger RNA biogenesis [BR:
pais03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PFX98_10930 (pnp)
Transfer RNA biogenesis [BR:
pais03016
]
Prokaryotic type
tRNA degradation factors
PFX98_10930 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
KH_KhpA-B
DUF5813
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WIT14109
UniProt:
A0AA95NGV0
LinkDB
All DBs
Position
complement(2366861..2369035)
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AA seq
724 aa
AA seq
DB search
MSLFNKVTKTFQWGNHQVIMETGEIARQASGAVLVNIEDTVVLATVVAKGEAKAGQDFFP
LTVDYLEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFFNEVQVVVHVV
SLNPEVQADIAALIATSAALAISGIPFNGPIGAARVGYVNGEYVLNPGKTALLDSKLDLV
VAGTEAAVLMVESEADQLSEDIMLGGVVFGHEQGKIAINAIHELVRDAGKPSWNWVAPAK
NEPFIAKVTALAEEALRAAYQIRSKQARTVACREAYAKVKETLKAEGVEFDGVEVDGLLF
EIEARIVRGQILAGEPRIDGRDTRTVRPIEIRAGVLPRAHGSSLFTRGETQALVAATLGT
DRDSQTIDALAGEFSESFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPNK
EDFPYSIRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKDANRFAVL
TDILGDEDHLGDMDFKVAGTTTGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMV
EAVAGASTEVSEFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTTIDIGEDGTITIA
STDADKAAHAKKRIEEITAEVEVGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHQR
VEKVTDFLTEGQIVKVKVLETDEKGRIKLSMKALIDRDAAPAFAPQAAPVAAPVAEEGAA
ESGR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgttcaacaaagtcaccaagaccttccaatggggcaaccaccaggtcatcatg
gaaaccggcgagatcgcacgccaggcttccggcgccgtgctggtgaatatcgaggacacc
gtggtgctggccaccgtggtggccaagggtgaggccaaggccggccaggacttcttcccg
ctgaccgtcgactatctcgagaagacctatgccgccggcaagatccccggcagcttcttc
aagcgtgaaggccgccccagcgagctggaaaccctgacctcgcgcctgatcgaccgcccg
atccgcccgctgttccccgaaggcttcttcaatgaagtgcaggtggtggtgcatgtggtg
tcgctgaaccccgaggtgcaggccgacatcgctgccctgatcgccaccagtgccgcgctg
gccatctccggcatccccttcaatggcccgatcggcgctgcgcgcgtgggctatgtgaac
ggcgaatacgtgctgaaccccggcaagaccgcgctgctggactccaagctggacctggtg
gtggccggtaccgaggccgccgtgctgatggtggaatccgaagccgaccagctcagcgaa
gacatcatgctgggtggcgtggtgttcggccatgagcaaggcaagatcgccatcaacgcg
atccatgaactggtgcgcgacgccggcaagccgagctggaactgggtggctccggccaag
aacgaacccttcatcgccaaggtcacggccctggccgaagaggcgctgcgcgccgcctac
cagatccgctccaagcaagcccgcaccgtggcctgccgcgaggcctatgccaaggtcaag
gagaccctgaaggccgagggcgtggaattcgacggtgtcgaggtcgacggcctgctgttc
gagatcgaagcccgcatcgtgcgcggccagatcctggccggtgagccccgcatcgacggc
cgcgacacccgcaccgtgcgcccgatcgagatccgcgccggcgtgctgccgcgcgcccac
ggttcctcgctgttcacgcgtggcgagacccaggccctggtggccgcgaccctcggcacc
gaccgcgattcgcagaccatcgacgcgctcgccggcgagttcagcgagagcttcatgctg
cactacaacatgcctccgttcgccaccggcgaaaccggtcgcgtgggcagccccaagcgc
cgcgaaatcggccacggccgtctggccaagcgcgccctggtggcggtgctgccgaacaag
gaagacttcccctactcgatccgcgtggtgtcggaaatcaccgagtccaacggctcctcg
tcgatggcttcggtgtgcggcggctgcctctcgctgctggacgccggcgtgcccctgaag
gcgcatgtggccggtatcgccatgggcttgatcaaggacgccaaccgtttcgccgtgctg
accgacatcctgggcgatgaagatcatctgggcgacatggacttcaaggttgcgggtacc
accaccggtatcacggccctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgcactggcgcaagccaaggaggcgcgtctgcacatcctgggcaagatggtg
gaagcggtggccggcgcctcgaccgaggtgtcggagttcgcgccccgtctgtacaccatg
aagatcaaccccgagaagatccgtgacgtgatcggcaagggcggcgccaccatccgtgcg
ctgaccgaagagaccggcaccaccatcgacatcggcgaagacggcaccatcaccatcgcc
tcgaccgacgccgacaaggccgcacacgccaagaagcgcatcgaagagatcaccgccgaa
gtggaagtgggcaaggtctacgaaggcccgatcaccaagatcctggacttcggtgcgctc
gtgaacctgctgcccggcaaggacggtctgctgcacatcagccagatcgcccaccagcgc
gtcgagaaggtcaccgacttcctgaccgaaggccagatcgtcaaggtcaaggtgctggag
accgacgagaagggtcgcatcaagctgtcgatgaaggccctgatcgaccgcgacgctgcg
cccgcattcgcaccgcaagcagcgcccgtcgctgccccggtggccgaagaaggcgcggcc
gagtcaggccgctag
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