Paucibacter sediminis: PFX98_13170
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Entry
PFX98_13170 CDS
T10150
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pais Paucibacter sediminis
Brite
KEGG Orthology (KO) [BR:
pais00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pais03016
]
PFX98_13170
Enzymes [BR:
pais01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PFX98_13170
Transfer RNA biogenesis [BR:
pais03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PFX98_13170
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
WIT09887
UniProt:
A0AA95NBS8
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All DBs
Position
complement(2834115..2836166)
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AA seq
683 aa
AA seq
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MFALFDEAGKFLAGRVMSEAESSMQIELDSGKRVKVKAANVLLKFDKPAPAELLAEGQRL
AQEIDLDLAWEFAPEGEFAFADLARDYFDAKAGVTHQAAALFRLFEAPHYFRRMGRGQFK
KAPEEIVKAALLGLERKRQQALQIEAWAEELAAGRCPDAIREQIYKILFKPDKNGPEYKA
VVEATKRAQKAPLDLLKGAGAITSAYQFHWKRFLFENFPKGTGFPALTAPEIKDELPLSS
ARAFSIDDSATTEIDDALSVQGLGTGTVVFGIHIAAPGLAIQPDSAVDKVARERLSTVYM
PGWKLTMLPDEVVQAYTLIEGRDCPAVSLYVTLDEATLAIQGSETRLERVAIVSNLRHDK
LDAVITEATLTGAAPADYAHAAELAFAFRLAQALKAQREVVRGKPENFNRPDYNFRLDSG
GLSEPEGGELVSIGTRVRGAPLDLIVAEAMILANSSWGGWLNELGLPAIYRSQASLAPGV
KVRMGTKALPHAGMGVAQYTWATSPLRRYVDLVNQWQIIACARHGRTAALAAPFKPKDAQ
LFSIISGFDAAYTAYNGFQSGIERYWTLRYLQQNAITELTASVMKDGLVRADTLPLVFKA
LGCEGLARGSHVRVRITGCDEMTLDVHASLVERLDEAQAPDEDVELPEDDETEASGPLTL
AIDMNADVGADEPADTKAEAAPT
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccctgttcgatgaagccggaaaattcctcgccggccgtgtgatgtccgaagcc
gagtcctcgatgcagatcgagctcgattcgggcaagcgcgtcaaagtaaaggcggccaat
gtgctgctcaagttcgacaaacccgcgccggccgagctgctcgccgaaggccagcgcctg
gcccaggagatcgacctggatctggcctgggaattcgcccccgagggcgagttcgcgttt
gcggacctggcgcgcgactatttcgatgccaaggccggggtcacgcaccaggccgccgcg
ctgttccgcctgttcgaagcgccgcattacttccgccgcatgggccgtggccaattcaag
aaggcgcccgaggagatcgtcaaggcggccctgctgggcctggagcgcaagcgccagcaa
gccctgcagatcgaggcctgggccgaggagctggccgccggccgctgccccgatgcgatc
cgcgagcagatctacaagatcctcttcaagcccgacaagaacggccccgagtacaaggcc
gtggtcgaggccaccaagcgcgcgcagaaagcgccgctggacctgctcaagggcgccggc
gcgatcacgagcgcctaccagttccactggaagcgcttcctgttcgagaacttccccaag
ggcaccggtttcccggccctcacggcccccgagatcaaggacgagctgccgctttccagc
gcccgcgccttctcgatcgacgactcggccaccaccgagatcgacgatgcgctctcggtg
cagggcctgggcacgggcacggtggtgttcggcatccacatcgccgcgccgggcctggct
atacagccggactcggcggtggacaaggtagcgcgcgaacgcctctcgaccgtctacatg
ccgggctggaagctcaccatgctgcccgacgaggtggtgcaggcctacacgctgatcgag
gggcgcgattgcccggcggtgtcgctgtacgtgacgctggacgaggccacgctggccatt
cagggcagcgagacgcggctggagcgcgtcgccatcgtctccaatctgcgccacgacaag
ctggacgcggtgatcaccgaggccacgctgaccggcgccgcgccggccgattacgcgcat
gccgccgagctcgcctttgccttccgcctggcacaggcgctgaaggcgcagcgcgaggtg
gtgcgcggcaagcccgagaacttcaaccgccccgactacaacttccgcctcgacagcggc
ggcctgagcgaacccgagggcggcgagctggtgagcataggcacgcgcgtgcgcggtgcg
ccgctggacctgatcgtggccgaggcgatgatcctggccaacagcagctggggcggctgg
ctgaacgagctgggcctgcccgccatctaccgcagccaggccagcctggcgcccggcgtg
aaggtccgcatgggcaccaaggcgctgccgcacgccggcatgggcgtggcgcaatacacc
tgggccacctcgccgctgcgccgctatgtggacctggtgaaccagtggcagatcattgcc
tgcgcccgccacggccgcaccgccgcgctggccgcgcccttcaagcccaaggacgcgcag
ctgttctccatcatctcgggcttcgacgcggcctacaccgcctacaacggtttccagtcg
ggcatcgagcgctactggacgctgcgctatctgcagcagaacgccatcaccgaactcacc
gcctcggtgatgaaggatgggttggtgcgcgccgacaccctgccgctggtgttcaaggcg
ctgggctgcgaaggcctggcgcgcggcagccatgtgcgcgtgcgcatcaccggttgcgac
gagatgacgctggacgtgcatgccagcctggtcgagcgcctggacgaggcccaggcgccg
gacgaggatgtcgaactgcccgaggatgacgagaccgaggccagcggcccgctgacgctg
gcgatcgacatgaacgccgatgtaggcgcggacgagccggcggacaccaaggccgaggcc
gcaccgacctga
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