Paucibacter sediminis: PFX98_13825
Help
Entry
PFX98_13825 CDS
T10150
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pais Paucibacter sediminis
Pathway
pais03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pais00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFX98_13825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pais03019
]
PFX98_13825
03009 Ribosome biogenesis [BR:
pais03009
]
PFX98_13825
Enzymes [BR:
pais01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PFX98_13825
Messenger RNA biogenesis [BR:
pais03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFX98_13825
Ribosome biogenesis [BR:
pais03009
]
Prokaryotic type
rRNA processing factors
PFX98_13825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WIT10015
UniProt:
A0AA95N9R8
LinkDB
All DBs
Position
complement(2977740..2980670)
Genome browser
AA seq
976 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQFFRDGVDVRNAKIQDAIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEDREELKENLDQLEYPKGMSLIARTAGIGRSAAELQ
WDLNYMLKLWTAIDDASKGGKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDLFEQAH
QFMNHVMPDQGHRVKRYRDDAPLFSRFQIEHQIETAHSRTVNLPSGGAIVIDHTEALVSV
DVNSARATRGGDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVEQR
LRDALRSDRARVQFASISKFGLLELSRQRLRPALSEGNHVTCPRCNGTGHIRDTESSALQ
ILRMVQEEAMKDNTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRVTVLLVPNKHLETPN
YKLERLRHDDPRLENLQASYTMIEEPQDEVGITRRGSDDKGKSKQEPVVKGIMPEGAAPM
PTAPAPKPVAVEPVAAPVAAPAAGGGFFGWIKKLFVAAPAEAPAPAVEAKPAAEGRKDGK
REGGRDGRRDRGDRGGRGERGERAERGERSKRGEARADGKPQDGQRAERGERQERGERPE
RQERAGRRNERGNDKPELALGEQRPERTERAERGERGGEGRRPRGERAERPQRNEEARVD
SAALQAEPSDAQLDNPAFQDTLPEGLAANEAGSEERQGRRRRRRGGRDRDDRAAEGVEGT
ELNQEQAEAAAAEPAEAVEGTEAPAAADEAGEPQARDGRRRRGGRNRRERGEGMAADEAQ
AEGMAEPGPAAQAPQQMELAAPAEPAAPPPAPAPAAIAAPATPVVAAPVAPLAAPVVPAF
ELPVNDLQAIAEGAGLQWVNSDADKVRVVQEAIAAEPKPVHVPRERPPLVEIDAGPLVLV
ETRKDLAQITLPFEQR
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctgatcaatgcgacgcagccggaagagcggcgcctcgcaatcgttgat
ggccagaaactgctggacttcgaaaccgaaatcgaaggccgcgagcagcgcaagggcaat
atctacaaggccgtggtgacgcgggtcgagccctcgctcgaagcctgcttcgtggactac
ggcgaagaccgccacggtttcctgcccttcaaggaaatctcgcgccagttcttccgcgac
ggcgtggatgtgcgcaatgccaagatccaggacgccatcaaggaaggccaggaactgctg
gtgcaggtggaaaaggaagagcgcggcaacaagggtgcggcgctcaccaccttcgtctcg
ctggccggccgctacctggtcttgatgcccaacaacccgcgcggcggtggcgtgagccgc
cgtatcgagggcgaggaccgcgaagagctgaaggaaaacctcgaccagctcgagtacccc
aagggcatgagcctgatcgcgcgcaccgccggcatcggccgcagcgccgccgagctgcag
tgggacttgaactacatgctcaagctctggaccgcgatcgacgacgcgtccaagggtggc
aagggcgccttcctgatctaccaggaatcctcgctggtgatccgcgccatccgcgattac
ttcaccgccgacatcggtgagatcctcatcgataccgacgacctgttcgagcaggctcac
cagttcatgaaccacgtgatgcccgaccagggccatcgcgtgaagcgctaccgcgacgac
gcgccgctgttcagccgtttccagatcgagcaccagatcgagaccgcgcacagccgcacc
gtcaacctgccctcgggcggcgcgatcgtgatcgaccacaccgaggccctggtctcggtg
gacgtgaactcggcgcgcgccacccgtggcggcgacatcgaggaaaccgccacccgcacc
aatctggaagccgccgacgaaatcgcgcgccagatgcgtctgcgcgatctgggcggcctg
atcgtggtcgacttcatcgacatggaagagtcgaagaaccgccgcgaggtggagcagcgc
ctgcgcgacgccctgcgcagcgaccgcgcccgcgtgcagttcgcctccatcagcaagttc
ggtctgctggagctctcgcgccagcgcctgcgcccggcgctgagcgaaggcaaccacgtc
acctgcccgcgctgcaatggcaccggccacatccgcgacaccgagtcctcggcgctgcag
atcctgcgtatggtccaggaagaagcgatgaaggacaacaccgccgccgtgcatgtgcag
gtgccggtggaagtgaccagcttcctgctgaacgagaagcgcaccgagatcaccaagatc
gagctgaagcagcgcgtcaccgtgctgctggtgcccaacaagcatctcgagacgcccaac
tacaagctcgagcgcctgcgccacgacgatccgcgcctggaaaacctgcaggccagctac
accatgatcgaagagccgcaggacgaggtgggcatcacccgccgcggcagcgacgacaag
ggcaagagcaagcaggagccggtggtcaagggcatcatgcccgaaggcgccgcacccatg
cccaccgcaccggcgcccaagcccgtggcggtggagcccgtggctgcaccggtggccgcg
ccggccgccggcggtggcttcttcggctggatcaagaagctgttcgtggctgcaccggcc
gaggctccggccccggccgtggaagccaagccggctgccgaaggccgcaaggacggcaag
cgcgaaggtggccgcgatggccgccgtgatcgcggcgaccgcggtggtcgtggcgaacgc
ggcgagcgcgccgaacgtggcgagcgcagcaagcgcggcgaggcccgcgccgatggcaag
ccgcaggacggccagcgcgccgaacgcggcgagcgccaggagcgtggcgagcgccccgag
cgccaggagcgcgccggccgccgcaatgagcgcggcaacgacaagcccgagttggcgctt
ggcgagcagcgccccgagcgcacggaacgtgccgagcgcggcgagcgtggcggcgaaggc
cgtcgcccgcgcggcgagcgtgccgagcgcccgcagcgcaacgaagaagctcgtgtggac
agcgcggccctgcaggccgagcccagcgatgcgcaactcgacaacccggccttccaggac
acactgcccgaaggcctggcagcgaacgaggccggcagcgaagagcgccagggccgccgc
cgccgccgccgtggtggccgcgaccgcgatgaccgcgccgccgaaggcgtcgagggcacc
gagctgaaccaggagcaggccgaagccgctgctgccgagccggccgaagccgtcgaaggc
accgaggcccccgccgctgccgacgaggccggtgaaccccaggcccgcgatggccgccgc
cgccgtggtggccgcaaccgccgcgagcgcggcgaaggcatggcggccgatgaggcgcag
gccgaaggcatggccgagccgggcccggccgcccaggcaccgcagcagatggaactggcc
gcgccggccgaacccgccgcaccgccgccggcacccgctcccgcagcgatcgccgccccg
gcaacgccggtggtcgcagcacccgtggcgccgctcgccgcgccggtggtgccggccttc
gagctgccggtgaacgatctgcaagccatcgccgagggcgcgggcctgcaatgggtcaat
tccgacgcagacaaggtgcgtgtggtgcaggaggcgattgccgccgaacccaagcccgtg
catgtgccgcgcgagcgcccgcctctggtcgagatcgacgcaggcccgctggtgctggtg
gagacgcgcaaggatctggcacagatcaccctgcccttcgagcagcgctga
DBGET
integrated database retrieval system
