Paucibacter sediminis: PFX98_14975
Help
Entry
PFX98_14975 CDS
T10150
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pais Paucibacter sediminis
Pathway
pais03420
Nucleotide excision repair
pais03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pais00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFX98_14975
03430 Mismatch repair
PFX98_14975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pais03400
]
PFX98_14975
Enzymes [BR:
pais01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFX98_14975
DNA repair and recombination proteins [BR:
pais03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFX98_14975
MMR (mismatch excision repair)
Other MMR factors
PFX98_14975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
WIT10228
UniProt:
A0AA95NAR4
LinkDB
All DBs
Position
3228428..3230842
Genome browser
AA seq
804 aa
AA seq
DB search
MSQPPFEDDLFTPPTTGLLKNLNPEQHAAVTLGQEPALILAGAGSGKTRVLTTRIAWLMS
QGLVAPGGVMAVTFTNKAAKEMVTRLTAMLPVNVRGMWIGTFHGLCNRFLRAHWKLAGLP
QGFQILDASDSVSAVKRVIKAMKLDEERFVPKQVSWFIAGAKEDGLRAKDIEQRDEQSRT
MVAIYQAYQDQCEREGVVDFAELMLRTYELLRDHAELRAHYQQRFKYILVDEFQDTNKLQ
YAWLKMFAPPGAGQGVFAVGDDDQSIYAFRGARVGNMADFEREYRVRKVVKLEQNYRSFG
NILDAANELISRNSHRLGKNLRTEMGPGEPVRVNESASDFAEAQWLLEEAQALHRQGMPR
QEIAILYRSNAQSRVLESALFNAGIPYRVYGGLRFFERAEVKHALAYLRLIENANDDTSF
LRVVNFPARGIGARTIELLQDAARVSGRSLYQSVGAVAGKGGSNLAGFVSLVESMRNLTQ
GLTLREIISQMLESSGLAEFYRNDKDGAERLENLDELINAAEAFVTQEGFGKDAVALPVD
ELAPGAIAEGLPNAVAAAAVTPDAETGEIMSPLAAFLTHASLEAGDNQAQAGQDAIQLMT
VHSAKGLEFDAVFITGLEEGLFPHENSLADGDGLEEERRLMYVAITRARQRLYLSFSQTR
MLHGQTRYNVKSRFLEELPEAALKWLTPRNQGFGSGFAREYQSAWERGSGLKSMVGAGRV
ETSTAARAPYVPPVPQTMKQAAAQKVGNEYGGLRVGKGVFHNKFGEGVLVTLEGSGQDAR
AQVNFGRHGMKWLALAVAKLTPID
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagccccccttcgaagacgatctgttcacgccccccaccacgggtttgctgaag
aacctcaaccccgagcaacacgccgccgtcaccctgggccaggagcccgcgctgatcctg
gccggcgccggctcgggcaagacccgggtgctgaccacgcgcatcgcctggctgatgagc
cagggcctggtggcgcctggcggggtgatggccgtgaccttcaccaacaaggccgccaag
gaaatggtgacccgcctcaccgcgatgctgccggtgaatgtgcggggcatgtggataggc
accttccacggcctgtgcaaccgcttcctgcgcgcgcattggaagctggccggcctgccg
cagggcttccagatcctggacgcgagcgattcggtctctgccgtcaagcgcgtcatcaag
gccatgaagctggacgaagagcgcttcgtgcccaagcaggtgagctggttcattgccggt
gccaaggaggacggcctgcgcgccaaggacatcgagcagcgcgatgagcagtcgcgcacc
atggtggcgatctaccaggcctaccaggaccaatgcgagcgcgagggcgtggtggacttc
gccgagctgatgctgcgcacctacgagctgttgcgcgaccacgccgagctgcgcgcgcat
taccagcagcgcttcaagtacatcctggtggacgagttccaggacaccaacaagctgcaa
tacgcctggctgaagatgttcgcgccgccgggcgcgggccagggcgtgttcgcggtgggc
gacgacgaccagagcatctacgccttccgcggcgcgcgcgtcggcaatatggccgatttc
gagcgcgagtaccgcgtcagaaaggtggtcaagctggagcagaactaccgcagcttcggc
aacatcctggacgccgccaacgagctcatcagccgcaacagccaccgcctgggcaagaac
ctgcgcaccgagatgggccccggcgagccggtgcgggtgaacgaatcggccagcgatttc
gccgaggcgcaatggctgcttgaggaggcccaggccctgcatcgccagggcatgccgcgc
caggagatcgccatcctctaccgcagcaatgcgcagtcgcgcgtgctggagtcggcgctc
ttcaatgccggcatcccgtatcgcgtctatggcggcctgcgcttcttcgagcgtgccgag
gtcaagcatgcgctggcctatctgcgcctgatcgagaacgccaacgacgacaccagcttt
ctgcgcgtggtgaacttcccggcgcgcggcatcggcgcgcgcaccatcgagctgctgcag
gacgccgcgcgcgtcagcggccgcagcctctaccagagcgtgggcgcggtggcgggcaag
ggcggcagcaacctggccggctttgtgagcctggtcgagtccatgcgcaacctcacgcaa
ggcctgaccctgcgcgagatcatctcgcagatgctcgagagctcgggcctggccgagttc
taccgcaacgacaaggacggcgccgagcgcctggagaacctggacgagttgatcaacgcc
gccgaggccttcgtcacccaggagggcttcggcaaggacgccgtggccctgcccgtcgac
gaactcgcgccgggcgccatcgccgagggcctgcccaatgcggtggccgccgcggcggtg
acgccggatgccgagaccggcgagatcatgtcgccgctggcggccttcctgacgcatgcc
tcgctggaggccggcgacaaccaggcccaggcgggccaggacgcgatccagctcatgacg
gtgcattcggccaagggcctggagttcgacgccgtcttcatcaccggcctggaagagggc
ctgttcccgcacgagaactcgctcgccgacggcgacggcctggaggaagagcggcgcctg
atgtatgtggcgatcacgcgcgcgcgccagcgcctctacctgagcttcagccagacccgc
atgctgcacgggcagacgcgctacaacgtgaagagccgcttcctcgaggaactgcccgag
gccgcgctcaaatggctgacgccgcgcaaccagggcttcggctcgggctttgcgcgcgag
tatcagagcgcctgggagcgcggctccggcctcaagtccatggtgggcgcgggccgtgtc
gagacatcaacagcagccagggcgccctatgtgccgccggtgccgcagaccatgaagcag
gcggcggcgcagaaggtcggcaacgagtatggcggcctgcgcgtcggcaagggcgtgttc
cacaacaagttcggcgagggcgtgctggtgacgctggaaggcagcggccaggatgcgcgc
gcgcaagtcaacttcggccgccacggcatgaagtggctggcgctggcggtggccaagctg
acgccgatcgattga
DBGET
integrated database retrieval system
