Paucibacter sediminis: PFX98_18075
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Entry
PFX98_18075 CDS
T10150
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pais Paucibacter sediminis
Pathway
pais03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pais00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFX98_18075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pais03019
]
PFX98_18075
Enzymes [BR:
pais01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFX98_18075
Messenger RNA biogenesis [BR:
pais03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFX98_18075
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AppA_4HB
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIT10807
UniProt:
A0AA95SLY4
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All DBs
Position
complement(3896043..3897533)
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AA seq
496 aa
AA seq
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MSFDSLGLAAPLLKAIADAGYTTPTPIQSQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML
HRLAAGGPVLNKRGKPAIRALVLTPTRELAAQVEESVKTYGKYLPLKSMVMFGGVGMQPQ
INRLRDGVDILVATPGRLLDHAQQGTLDLSQVQILVLDEADRMLDMGFVHDIKKVLALLP
AKKQSLLFSATFSDEIKALADRLLNQPALIEVARRNQTNESIAQKVHPVGRERKKELLVH
LIKSGDWHQVLVFTRMKHGANRLTDYLNDQGISAMAIHGNKSQGARTKALADFKSGDLTC
LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGAVGEAVSLVCVDENGFLR
EIEKLIKREVPKEIVPGFAPDPSERPEPIVLGRMVLNGNGSRSGGGRGAPSRGGGGGGRG
APRDGAGRDGGRDGARHGAPAAKRPAGPGAAHAGHGGAKPQQGQPRHAQPARPAAPKPNG
AAPRHNNGPRLTQPKR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgattctctgggcctggccgccccccttctcaaggccatcgccgacgccggc
tacaccacccccacccccatccagagccaagcgatccccgccgttctccaaggcggtgac
ctgttggctggcgcacagaccggcacgggcaagacggccggcttcacgctgcccatgctg
caccgcctcgcggcgggcggcccggtgctgaacaagcgcggcaagcccgccatccgtgcc
ctcgtgttgacccccacccgcgaactcgcggcccaggtggaggaaagcgtcaagacctat
ggcaagtacctgccgctcaagagcatggtgatgttcggcggcgtcggcatgcagccgcag
atcaaccgcctgcgcgatggcgtggacatcctggtggccacccccggccgcctgctggac
cacgcgcagcagggcacgctggacctgagccaggtgcagatcctggtgctggacgaagcc
gaccgcatgctggacatgggctttgtgcacgacatcaagaaggtgctcgcgctcctgccc
gccaagaagcagagcctgttgttctcggccaccttcagcgacgagatcaaggccctggcc
gatcgtctgctgaaccagcccgcgctgatcgaagtggcgcgccgcaaccagaccaacgag
tcgatcgcgcaaaaggtccacccggtgggccgcgagcgcaagaaggagctgctggttcac
ctgatcaagagcggcgactggcaccaggtgctggtgttcacgcgcatgaagcatggtgcc
aaccgcctcaccgactacctgaatgaccagggcatcagcgccatggccatccacggcaac
aagagccagggtgcgcgcaccaaggcgctggccgacttcaagagcggcgatctgacctgc
ctggtggccaccgacatcgcggcccgcggcatcgatatcgaccagctgccccacgtggtg
aactacgagctgcccaacgtccccgaggactatgtgcaccgcatcggccgcaccggccgc
gccggcgctgtgggagaagcggtctcgctggtgtgcgtggacgagaacggcttcctgcgc
gagatcgagaagctcatcaagcgcgaggtccccaaggaaatcgtgcccggtttcgcgccc
gatccgagcgagcgccccgagcccatcgtgctgggccgcatggtgctgaacggcaatggc
agccgcagcggcggtggccgcggtgcgccctcgcgcggcggtggcggcggtggccgtggc
gccccgcgcgatggcgctggccgtgacggcggacgcgacggtgcccgccatggcgcgccg
gccgccaagcgcccggccggccccggtgcggcgcatgccggccacggtggcgccaagccc
cagcagggccagccccgccatgcgcagccggcccgcccggccgcgcccaagcccaatggc
gccgcgccgcgccacaacaatggcccgcgcctgacgcaacccaagcgctga
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