KEGG   Paucibacter sediminis: PFX98_20250
Entry
PFX98_20250       CDS       T10150                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
pais  Paucibacter sediminis
Pathway
pais03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pais00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PFX98_20250 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pais03400]
    PFX98_20250 (uvrB)
DNA repair and recombination proteins [BR:pais03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PFX98_20250 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PFX98_20250 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C UVR ResIII DEAD AAA_30 AAA_22 Kinesin AAA_16
Other DBs
NCBI-ProteinID: WIT11207
UniProt: A0AA95NE72
LinkDB
Position
complement(4366122..4368242)
AA seq 706 aa
MPDAPAVMPIAEEDTNAPKGEFVSFEGSPFQLFQPFPPAGDQPTAIAQLVEGINDGLSYQ
TLLGVTGSGKTFTMANVIARLGRPAIIFAPNKTLAAQLYSEFRDFFPKNAVEYFVSYYDY
YQPEAYVPQRDLFIEKDSAINEQIEQLRLSCTKSLMERRDVVIVASVSAIYGIGNPADYH
QMVMTLRVGDKMGQRDVIAQLIRMQYQRNEMEFVRGHFRVRGDTIDVFPAEHSELALRIE
LFDDEVEALQLFDPLTGQIRQKIPRFTVYPSSHYVTPRDRVLAAMDTIKAELRERVGQFV
AEGKLVEAQRVEQRTRFDLEMLQEVGHCKGIENYTRHLSGAAPGEPPPTLVDYLPPDALM
FLDESHVLIGQFGGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEEFERKMRQAVFVSAT
PAAYEQQNSGQVVEQVVRPTGLVDPTVEVRPATHQVDDVLQEIHERVKVNERVLITTLTK
RMAEQLTDYLSDNGVKVRYLHSDVDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVS
LVAILDADKEGFLRAERSLIQTIGRAARNLNGKAILYADRMTESMKKAIGETERRRAKQV
AFNLEHGITPRGVNKRIRDLIDGVYSDKPGRDDQKLIHAAEVEVLSEKDLSKRITQLEKQ
MLEHARNLEFEKAARIRDQLAELREQAFGAAVHDNIVPISAFKPGK
NT seq 2121 nt   +upstreamnt  +downstreamnt
atgccagatgcacctgccgtgatgcctattgccgaggaagacaccaacgccccgaagggc
gagttcgtctctttcgaaggctcgccgttccagcttttccagccctttccgccggcgggc
gaccagccgaccgcgatcgcgcagctggtggagggcatcaacgatggcctcagctaccag
accctgctgggcgtgaccggctcgggcaagaccttcacgatggccaatgtgatcgcgcgc
ctggggcggcctgccatcatctttgcgcccaacaagactctggcggcgcagctctacagc
gagttccgcgacttctttcccaagaacgcggtggagtatttcgtcagctactacgactac
taccagcccgaggcctatgtgccgcagcgcgatctcttcatcgagaaggacagcgccatc
aacgagcagatcgagcagttgcgcctgtcctgcaccaagagcctgatggagcggcgcgac
gtggtgatcgtggcgtcggtgtcggccatctacggcatcggcaacccggccgactatcac
cagatggtgatgacgctgcgcgtgggcgacaagatgggccagcgcgatgtgatcgcccag
ctgatacgcatgcagtaccagcgcaacgagatggagttcgtgcgcgggcatttccgcgtg
cggggcgacaccatcgacgtgttcccggccgagcattcggagctggccctgcgcatcgag
ctgttcgacgacgaggtcgaggccctgcagctgttcgacccgcttaccggccagatccgc
cagaagatcccgcgcttcaccgtctaccctagcagccattacgtcacgccgcgcgatcgc
gtgctggccgcgatggacaccatcaaggccgagctgcgcgagcgcgtcggccagttcgtg
gccgagggcaagctggtggaggcgcagcgcgtcgagcagcgcacccgcttcgacctggag
atgctgcaggaggtggggcattgcaagggcatcgagaactacacccgccatctctccggg
gccgcgccgggcgagccgccgccgaccctggtggactatctgccgccagatgcgctgatg
ttcctggacgagagccatgtgctgattggccagttcggcggcatgtacaacggcgaccgg
gcgcgcaagaccacgctggtggaatatggctttcgcctgccctcggcgctggacaaccgg
ccgctcaagttcgaggagttcgagcgcaagatgcgccaggcggtgtttgtctcggccacg
ccggccgcctacgagcagcagaactcggggcaggtggtggagcaggtggtgcggcccacc
ggcctggtggatccgacggtggaggtgcggcctgcgacccaccaggtggacgacgtgctg
caggagatccacgagcgcgtgaaggtgaacgagcgcgtgctcatcaccacgctgaccaag
cgcatggccgaacagctcaccgactatctgagcgacaacggcgtcaaggtgcgctatctg
cactcggacgtggacacggtggagcgtgtggagatcctgcgcgacctgcgcctgggggtg
ttcgatgtgctggtgggcatcaacctgctgcgcgaaggcctggacatccccgaggtctcg
ctggtggcgatcctggatgccgacaaggaaggctttctgcgcgccgagcgcagcctgatc
cagaccataggccgggccgcgcgcaacctgaacggcaaggccatcctctatgcggaccgc
atgactgagtcgatgaagaaggcgatcggcgagaccgagcggcgccgcgccaagcaggtg
gccttcaatctggagcatggcatcacgccgcgcggcgtcaacaaacgcatccgcgatctg
atcgacggtgtctattccgacaagccgggtcgcgacgaccagaagctgatccacgccgcc
gaggtggaagtgctgtcggagaaggacctcagcaagcgcatcacccagctcgagaagcag
atgctggagcatgcgcgcaacctggagttcgaaaaggcggcacgcatccgcgaccagctg
gccgagttgcgcgagcaggcctttggcgcggccgtgcacgacaacatcgtgccgatcagc
gccttcaagccaggcaagtga

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