Paucibacter sediminis: PFX98_20880
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Entry
PFX98_20880 CDS
T10150
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pais Paucibacter sediminis
Pathway
pais00300
Lysine biosynthesis
pais00470
D-Amino acid metabolism
pais01100
Metabolic pathways
pais01110
Biosynthesis of secondary metabolites
pais01120
Microbial metabolism in diverse environments
pais01230
Biosynthesis of amino acids
Module
pais_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pais00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PFX98_20880
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PFX98_20880
Enzymes [BR:
pais01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
PFX98_20880
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
WIT11325
UniProt:
A0AA95N9V8
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All DBs
Position
complement(4502139..4503344)
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AA seq
401 aa
AA seq
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MQQFPVRDGELLIGGHKLTTLAARVGQTPFYAYDRNLLAERVRALRVLLPAGVKLHYAMK
ANPMPAVVGLMAGLVDGIDVASAGELKVALDAGADPAEISFAGPGKRDVELRQSVAAGVL
VNVESPRELEVLARESQRLGQPARVALRVNPDFELKGSGMKMGGGPKQFGVDVEQMPAVL
KRVGALGLAFEGFHLFAGSQNLKAESICEAQQNSYALALRLSEHAPAPVRFLNLGGGFGI
PYFPGEQHLDLAPIAANLAALEQRCRQELPQASIVIELGRYLVGEAGVYVTRVVDRKLSR
GQVFLVTDGGLNHHLSASGNFGQVLRKNYPVAIGNRMASQPRELVSVVGPLCTPLDLLAD
RMELPVAGEGDLVVIYQSGAYGASASPQGFLGQAPLTEVLV
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaattcccggtccgggacggtgaattgctgatcggggggcacaaactcacgaca
ctggctgcccgagtcgggcagacgcccttctatgcctatgaccgcaacctgctggccgag
cgggtgcgggccttgcgcgttttgctgccggctggggtgaagctgcactatgcgatgaag
gccaacccgatgccggcggtggtggggttgatggcgggcttggtggatggcatcgacgtg
gcgtccgccggcgagttgaaggtggcactggatgccggcgcagacccggccgagatcagt
tttgccggcccgggcaagcgcgacgtcgagttgcgccaatcggtggccgcgggtgtgctg
gtgaatgtggagtcgccgcgcgagctcgaggtgctggcgcgggagtcgcagcgcctgggg
cagcctgcgcgagtcgcacttcgcgtcaatcccgacttcgagctcaagggctcgggcatg
aagatgggtggtggcccgaagcagtttggggtcgacgtcgagcagatgcccgccgtactc
aagcgtgtgggcgcgttggggctggccttcgagggcttccatctctttgccggctcgcag
aatctaaaagccgaatccatctgcgaggcgcaacagaattcctatgcactcgcgttgcgt
ttgtccgagcatgcgccagcgcccgtgcgcttcctgaatctcggcggcggcttcggcatc
ccctatttcccgggcgaacagcacctggacttggcgcccatcgctgccaacctggccgct
ttggaacagcgctgcaggcaggaacttccgcaggcaagcatcgtcatcgagctgggccgc
tatcttgtgggtgaggccggcgtctatgtgacacgcgtggttgaccgcaagctttcgcga
ggccaggtgttcttggtcaccgacggcgggctcaaccatcacctctcggcctcgggtaat
tttggccaggtgctgcgcaagaattatccggtggcgattggcaaccgtatggcgagccag
ccccgcgagctcgtctccgtggtcggccccctgtgcacgccgctggacctgctggctgac
cgcatggagctgccggtggcgggcgagggcgacttggtggtgatctaccaatcgggtgcc
tatggcgcaagcgccagcccgcagggctttctgggccaagcgcccttgaccgaggtgctg
gtatga
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