Pantoea ananatis AJ13355: PAJ_0035
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Entry
PAJ_0035 CDS
T01969
Symbol
rapA
Name
(GenBank) RNA polymerase associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
paj
Pantoea ananatis AJ13355
Brite
KEGG Orthology (KO) [BR:
paj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paj03021
]
PAJ_0035 (rapA)
Transcription machinery [BR:
paj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
PAJ_0035 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAK10115
UniProt:
A0A0H3L0A7
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All DBs
Position
complement(41837..44809)
Genome browser
AA seq
990 aa
AA seq
DB search
MKCYCLRMGNTFKNVKNSSKNYMVFTLGQRWISDTESELGLGTVVAIDTRMITLLFPATG
ENRLYARSDSPVTRVIFNPGDTVTSHEGWQMQVDEVRNDNDLITYIGTRLDTEETHVMLR
EVMLDSKLVFSKPQDRLFAGQLDRMDRFALRFRARKYQSEQYRLPVSGLRGMRTNLIPHQ
LHIAHDVGRRHAPRVLLADEVGLGKTIEAGMIIQQQLLAGRAERVLIVVPETLQHQWLVE
MLRRFNLRFALFDDDRYAEAQHDSDNAFDTEQLIICSLDFVRRNKQRLDKLADADWDLMV
VDEAHHLAWSEGEPSREYQVIEKLAEKTPGVLLLTATPEQLGMESHFARLRLLDPDRFHD
FAAFVEEQQHFRPIADAVTSLLADHAISQNEMNMINELVGEQDIEPLLQVANSDREGKQD
ARSELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHAIRLPLPAQYQTAIKVSGIMGTRK
SAEARARDLLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSNRKEKVLVICAQAATALQ
LEQVLREREGIRAAVFHEGLSIIERDRAAAWFASEENGAQVLLCSEIGSEGRNFQFASRL
VMFDLPFNPDLLEQRIGRLDRIGQAHDIQILVPWLEKTAQAVLLRWYHEGLDAFEHTCPT
GRAIYDSVNAELINYLAAPENSDGFDDFISECRKQHDALKSQLEQGRDRLLELNSNGGEA
AQALANTIAEQDNDTELVNFALNLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPEDG
CTITFNRDQALSREDTQFITWEHPLIRNGLDLILSGDTGSCALSLLKNKALPVGTLLVEM
IYVVESQAPKHLQLTRFLPPTPVRLLLDRNGTNLAGKVEFESFNRQLNAVNRHTGSKLVN
AVQQDVHAILTLAEKEVVSEARAVIDAARREASEKLGAELSRLEALRAVNPNIRDDEVEA
LETNRQQVLESLDEANWRLDALRLIVVTHQ
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgctattgcctgagaatggggaacaccttcaaaaacgttaaaaattcgagcaaa
aattatatggtttttacattaggtcagcgttggattagtgatacagaaagtgaactggga
ttaggcaccgtggtggcgattgatacgcgcatgatcaccctgctgttcccggccacaggg
gaaaatcgcctctacgctcgcagcgactcgccggtcacccgcgtgatttttaatccgggt
gataccgttaccagccacgaaggctggcagatgcaggtcgatgaagtacgcaatgacaat
gacctgataacctatatcggcacgcgccttgataccgaagaaacccacgtcatgctgcgt
gaagtgatgctcgacagcaaactggtgttcagcaaacctcaggacaggctgtttgcaggc
cagctcgaccgtatggatcgcttcgccctgcgttttcgcgcacgtaaatatcaaagtgag
cagtatcgcctgcccgtcagcggcctgcgcggcatgcgtaccaatctgatcccccaccag
ctgcatatcgcccacgacgtaggccgccgccatgcgccgcgcgtcctgctcgcggatgag
gtcggcctggggaaaaccatcgaagccggcatgatcatccagcagcagttgttggcaggc
cgtgctgaacgcgtacttatcgtcgtgccagaaaccctgcaacatcagtggctggtagaa
atgctgcgccgcttcaacctgcgcttcgccctgtttgacgacgatcgttacgctgaagcg
cagcacgacagcgacaatgcctttgacaccgaacagttgattatctgctcgctggacttt
gtgcgtcgcaacaaacagcgtctggataagctggcggacgcagactgggatttaatggtg
gtggatgaagcgcaccatttggcctggtccgaaggcgaaccaagccgcgagtatcaggtg
atcgaaaaactggctgaaaaaacgccgggcgtcctgttactgaccgcgacgccagaacag
ctgggcatggagagtcattttgcgcgcctgcgcttgcttgaccccgaccgttttcatgat
tttgccgcctttgttgaagagcagcagcacttccgcccgattgccgatgcggtgacatcg
ctgctggccgatcatgccatctcacaaaacgagatgaatatgatcaatgagctggtcggc
gagcaggatattgaaccgctgctgcaggtggcaaacagcgatcgtgaaggcaaacaggac
gcgcgcagcgaactcatttccatgctgatggatcgccacggtaccagccgcgtgctgttc
cgtaatacccgcaacggggtgaaaggcttcccgaaacgtgagttacacgctattcgtctg
cccctgccggctcagtatcaaacggccattaaggtgtccggtattatgggcacacgtaaa
agcgcagaagcgcgcgcgcgcgatctgctctatccggaacagatttatcaggagttcgaa
ggcgataccggcacctggtggaacttcgatccgcgcgttgaatggctcatgggttacctg
accagcaaccgtaaagaaaaagtgctggtgatctgtgctcaggccgctacagcacttcaa
ctggagcaggtgctgcgtgaacgtgaagggattcgcgccgccgtgttccatgaagggctg
tcgatcattgaacgcgatcgggctgccgcctggttcgcttctgaagagaacggcgcacaa
gttctgctgtgttccgaaattggttccgaaggccgtaacttccagttcgccagccgtctg
gtgatgttcgatctgccgtttaacccggatctgctggaacagcgtattggccgactggat
cgtattggccaggcgcacgatattcagattctggtcccctggctggagaaaacggcccag
gccgtgctgctgcgctggtatcacgaagggctggacgcgttcgagcacacctgcccgacc
ggcagagccatctacgacagcgtcaacgcagagctgattaactacctggccgcaccggaa
aacagcgacgggtttgatgatttcattagcgaatgccgtaagcagcatgatgcgctgaaa
tcccaactcgaacagggccgcgaccgcctgctggagctaaactctaacggtggtgaagcc
gcccaggcgctggccaataccattgccgaacaggataatgataccgaactggttaacttt
gctcttaacctgtttgatatcgtcggcattaatcaggaagaccgcagtgataacctgatc
gtgctgacaccttcagatcatatgctggttccggactttccgggcctgccggaagacggc
tgtacgatcaccttcaatcgcgaccaggccctgtcgcgtgaagatacgcagtttattacc
tgggaacatccgttaatccgtaatggcctggatctgattctgtcaggtgacaccggcagt
tgtgcgctgtcgctgttaaagaacaaggcattgcctgtggggacactgctggtcgagatg
atctacgtggtggaatcccaggcaccgaaacatctgcagctaacccgcttcctgccccct
acgccggtgcgcctgctgctggatcgcaacgggacgaacctggccggtaaagtggaattc
gaaagcttcaaccgccagttgaatgccgttaaccgccacaccggcagcaagctggtgaat
gccgtacagcaggacgttcacgcgatcctgacgctggctgaaaaagaagtcgtcagtgaa
gcacgtgccgttattgacgcggcacggcgcgaggcgagcgaaaagctgggggccgagtta
tcacgtctggaagcactgagagccgttaaccccaacatccgtgacgatgaggtcgaggcg
ctggaaacgaatcgccagcaggtactggagagtctggatgaagcgaactggcgactggat
gcactgcgtctgattgtggttacgcatcaataa
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