Pantoea ananatis AJ13355: PAJ_0121
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Entry
PAJ_0121 CDS
T01969
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
paj
Pantoea ananatis AJ13355
Brite
KEGG Orthology (KO) [BR:
paj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paj03019
]
PAJ_0121 (hrpB)
Enzymes [BR:
paj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAJ_0121 (hrpB)
Messenger RNA biogenesis [BR:
paj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PAJ_0121 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_22
AAA_19
T2SSE
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAK10201
UniProt:
A0A0H3KSQ4
LinkDB
All DBs
Position
142980..145487
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AA seq
835 aa
AA seq
DB search
MSATMRAILTQPFVEFAVSDLPVSAVLPDLLSALNDASNILLAAPTGAGKSTWLPLQLLQ
HQAIAGRIIMLEPRRLAARNVAQRLAEQLGEQPGATVGYRMRGESCAGPMTRLEVVTEGI
LTRMLQQDPMLDGVSLVILDEFHERSLQADLALALLLDVQQGLREDLKILLMSATLDNAR
LAALLPNAPLITSEGRSYPVERRYTALSQTLRFEEAVAREVAQLLREETGSLLLFLPGVA
EIERVKRELEARVDADVDLTPLYGALPLAAQQRAILPAASGRRKVVLATNIAETSLTIEG
IRLVVDSAQERSALFDARSGVTRLQTQRVSQASMTQRAGRAGRVMPGICLHLVAQEQASR
APAQSEAEILHSDLTSLWLELLQWGCTRIDQLQWIDLPPEKHLRAARQQLLRLGALDDQG
HLNALGRRMAQLGSDARLSAMLCAAGGDADAVASAALLVAILEDPPRSASVDLRDALYRP
SPQWQRRAQHWQKRIGVLGGRVDEDRFAALLTAGFSDRLARRRDNSGRYQLANGLGAMLD
EQQALTRYEWLIAPTLLQGSSAPDARILLAMPVDIDTLTQQCPLLVEQRTEVEWDEEKGT
LRTLRREQIGELVLKTQPLARPDAEVLQAAMLRWISKKGLSVLGWTPASGQLRLRIQCAA
QWLPEEPWPQVDDASLLESLEHWLLPEMSGVRDLKSLQSVNLVSALLHLLTWSQRQRLDT
VLPTHYTVPTGSRLPIRYDADKPPALAVRIQEMFGEASNPTVAEGRVPLVLELLSPAQRP
LQITRDLAAFWRGAYADVQKEMKGRYPKHPWPDDPASALPTRRTKKNTSQGGTSG
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctacaatgcgcgccatcttaacacagccattcgtggagtttgcggtgagtgat
ctacccgtcagcgcggtgttgcctgaccttctgagcgcgcttaacgacgcctcaaacatc
ctgctggccgcgcccactggcgcaggtaaatccacctggttgccgcttcagcttttacag
catcaggcgatagcgggacgcatcattatgctggagccgcgtcgccttgccgcacgtaat
gtggcgcaacggctggcagaacagttgggtgaacaacccggcgcgaccgtaggctaccgt
atgcgtggcgaaagctgcgcagggccgatgacccggcttgaagtggtgaccgaaggcatt
ctgacccgaatgctgcagcaggatcccatgctggacggcgtatcattggttatcctggat
gagtttcatgagcgcagcctccaggccgatctggcgctggcgctgctgctggacgtgcag
caggggttgcgtgaagatttgaaaatcctgctgatgtcggcgacgctcgataacgccagg
ctggcagccttgttaccgaatgcccctctcattacctcggaagggcggagctacccggtt
gaacgccgctacacggcgttgagccagactctgcggtttgaagaggcggtggcgcgcgaa
gtcgcgcagttgctgcgagaggaaacgggctcactgctgttgtttctgcctggcgttgcg
gaaatcgagcgggtaaagcgagagctggaagcgcgcgttgacgctgatgtggatctgact
ccgctgtatggcgcacttccccttgcggcccagcaacgggccatcctgcctgccgccagc
ggacgccgcaaagtggtgctggcgaccaacatcgccgaaaccagcctgacaattgaaggc
attcgcctggtggtggacagcgcgcaggaacgaagcgcgctgtttgatgcccgcagcggt
gtgacgcggctgcagacccagcgcgtcagtcaggcctccatgacgcagcgcgccggacga
gccggacgtgtcatgcccggtatttgcctgcatctggtagcgcaggaacaggcctcacgc
gcgcctgcgcagagcgaagcggaaattttgcacagcgatctcacctcgctgtggctggag
ctgctgcagtggggatgtacccgtatcgatcagctacagtggatcgatctgccgccggaa
aagcatttgcgtgcggcccggcagcagctgttgcggctgggggcgctggacgatcagggc
catcttaatgccctgggacgacgaatggcgcagttgggcagcgacgcccgtcttagcgcg
atgttatgtgcggcaggcggcgacgctgatgccgttgccagcgcggccttgctggtggcc
attctggaagatcctcctcgcagcgccagcgtcgatttacgtgacgcgctttatcgtcca
tcgcctcagtggcaacgccgcgcacagcactggcaaaaacgcatcggcgtcctgggtggc
cgggtggacgaagaccggtttgccgcgctgctgaccgctggattcagcgaccgcctggca
cgacgtcgcgataacagtggccggtatcagctcgctaacggactgggcgcgatgctggac
gaacaacaggcactgacgcgttacgaatggttaatcgcgcccacattgttacagggcagc
agcgcgccggacgcgcgcatcctgctggccatgcccgtcgatattgataccttgacgcaa
cagtgtccgctgctcgttgaacagcgtaccgaggtggaatgggatgaggagaaaggcaca
ctgcgcacgttgcggcgtgagcagattggcgaactggtcctgaaaacccaaccgcttgcc
cggcccgatgcagaagtactgcaggcggccatgctacggtggatcagtaaaaaaggactc
tcggtgttgggctggacgccggcgtccgggcagttgcgcctgcgcattcagtgtgcggcc
caatggttacccgaggagccgtggcctcaggttgatgacgccagcctgcttgagtcgctc
gaacactggcttctgcctgagatgagcggagtgcgcgacctgaagagtttacagtccgtg
aaccttgtcagcgcgctcttacatttgctcacatggtcacaacgtcagcggctggatact
gtgctgccaactcattacactgtgcccaccggaagtcggctgcccatccgctatgatgcg
gataaaccgcctgcactggcggtacgcatccaggaaatgtttggcgaagccagcaatccg
accgtggcagaagggcgggttccactggtactggagctgttatcgcccgcccagcgccct
ttacagatcacccgcgatcttgcggccttctggcggggtgcctatgcggacgtgcaaaaa
gagatgaaagggcgttatcccaaacatccctggcctgacgatcctgcctctgccttgccg
acaagacggacaaaaaagaatacgtcacagggcggaacctcaggttaa
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