Pantoea ananatis AJ13355: PAJ_0821
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Entry
PAJ_0821 CDS
T01969
Symbol
rne
Name
(GenBank) ribonuclease E Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paj
Pantoea ananatis AJ13355
Pathway
paj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAJ_0821 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paj03019
]
PAJ_0821 (rne)
03009 Ribosome biogenesis [BR:
paj03009
]
PAJ_0821 (rne)
Enzymes [BR:
paj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAJ_0821 (rne)
Messenger RNA biogenesis [BR:
paj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAJ_0821 (rne)
Ribosome biogenesis [BR:
paj03009
]
Prokaryotic type
rRNA processing factors
PAJ_0821 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
BAK10901
UniProt:
A0A0H3KV12
LinkDB
All DBs
Position
complement(976163..979450)
Genome browser
AA seq
1095 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPDGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAADSRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKDNTKEVHAIVPVPVASYLLNEKREAVNAIEKRQGGVRAVIVPDDRME
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PAEASPEVATPSATVTQPAPAAAPASEGFVSRLLSGLKKLFAGEPAPAAVEPVAEVTAPQ
KTSEDENGNPRGDRRNNRRNNNRRERTPRNGDNAQQRESRDNRDSRDNRDNRDNRGESRD
NREPREDNRRNKRQAQPNEVRDDRPVLSDEARQQRDEQQQQRREQRAERQRRRQEEKRAQ
QDANSAVEQTAEAVAPAAVDAQEDERVQVMPRRKPRQLTQKVRVGDNNDQPQAAAVESAE
SADVQKVQPVVETSQVEETEENEGRDNANMPRRSRRSPRHLRVSGQRRRRYRDERYPTQS
AMPLDAAAASPEMASGKVWIRYPVAQANEEQIVQDAPQSTPDYSREETAPAVALPVATEE
APASQAAPVQIAEPQADAPVTVVNTDDTQAIEAPVHHEPSVIPAAAEASAEAIAQQAQPA
DAVEAPEVKVPVVAESAPEETADEHAGTEVSAATEAQVAEVLHAPVAAEEAITPVSEPHA
PVAARDIPVEALKANAETRWKHFASAPMTKAPAPVWQPEPARQSDWQRPAFKFEGRGSAG
GHSATHQATAPATKP
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaggagttgcgcgttgccctggttgat
ggtcaacgtctgtacgatctggatatcgaaagcccaggacacgaacagaaaaaagccaat
atctacaaaggtaaaatcacccgtatcgaacccagccttgaagcggccttcgtcgattac
ggtgcagaacgtcacggtttcctccctctgaaagaaatttcccgcgaatacttccctgct
aattacaactcacacggtcgtccgaacattaaagacgtgctgcgtgaaggtcaggaagtc
attgttcagattgataaagaagaacgcggcaacaaaggcgctgcgctcactacctttatc
tctctggccggtagctatctggtattaatgccaaataacccgcgcgcgggtgggatttct
cgtcggattgaaggtgatgaccgtaccgaactgaaagaggcgctatcggcgctggaactc
cctgatggcatggggctgattgttcgcacggcgggcgtcggtaaatcagccgaatcgctg
cagtgggaccttagcttccgtctgaagcattgggaagccatcaaaaaagcggctgacagc
cgcgcggccccgttcctgatccatcaggaaagcaacgtgatcgtgcgcgccttccgcgac
tatctgcgtcaggatatcggtgagattcttatcgataacccgaaagtgcttgagctggca
cgtcagcatatcgccgcgctgggccgtccggactttagcagcaaaattaagctctacacc
ggtgagattccgctgttcagccattaccaaatcgaatcgcaaatcgaatccgctttccag
cgtgaagttcgcttgccgtcaggcggctcaatcgttatcgacagtaccgaagcgcttacc
gccatcgatatcaactccgcccgtgccacgcgcggtggcgatattgaagaaaccgccttt
aataccaacctggaagcggcagacgaaattgctcgccagctgcgtctgcgcgacctgggc
ggcctgatcgttatcgacttcatcgatatgacaccggttcgtcaccagcgcgcggttgaa
aaccgtctgcgtgaagccgtccgtcaggatcgcgcccgtattcaaatcagccatatttca
cgttttggcctgctggagatgtcccgccagcgcctcagcccgtccctgggcgagtccagc
caccacgtctgtccacgttgtagcggcaccggcactattcgtgataacgaatctctgtcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagacaacaccaaagaagtgcat
gctatcgtgccggtcccggttgcctcttacctgctgaatgaaaaacgtgaagcggtaaat
gctatcgagaaacgtcagggcggcgtacgtgcggtcatcgtgccggacgaccggatggaa
accccgcactactccgttctgcgcgtgcgcaaaggcgaagaaacgcaaacgctgagctac
cacctgccgaaactgcatgaagccgagatggcgatgccatctgaagaggagcatgctgag
cgccgccgtccagagcagcctgctctcgcagcctttgtgatgcccgatgcgccgccagca
ccggccgaagcctcaccggaagtggccacaccttcagcgactgtgacgcaacccgcacca
gcggccgcgccggccagtgaaggttttgtcagccgtctgctgagtggattgaaaaaactg
tttgctggcgaacctgctccggcggctgtcgagccggttgccgaggtgacggccccgcag
aaaaccagcgaggacgagaacggcaacccgcgtggcgatcgtcgtaataatcgtcgcaac
aataaccgtcgcgaacgtaccccgcgcaacggtgataacgcacaacagcgtgaatctcgt
gataaccgtgactctcgtgataaccgtgataaccgtgataaccgtggtgagtctcgagat
aatcgcgagccgcgtgaagacaatcgtcgtaacaagcgtcaggcccagcctaatgaggtg
cgtgacgatcgtccggtactgagcgatgaagcgcgccagcagcgtgatgagcagcagcaa
cagcgccgcgaacaacgtgctgaacgtcagcgtcgtcgtcaggaagagaaacgtgctcag
caggacgctaacagcgcggtggaacaaaccgccgaagcggtcgcgcctgctgctgtggat
gcgcaggaagacgagcgcgttcaggtgatgccacgccgtaaaccgcgtcagctgacgcag
aaagtccgcgttggtgataacaatgaccagccgcaggccgccgccgttgaatcagccgaa
tcggctgacgttcaaaaggtgcagcctgttgtcgaaacgtcacaggttgaagagacggag
gagaacgaaggtcgcgataatgccaatatgccacgtcgttcacgccgttcacctcgccat
ctgcgcgtaagtggtcagcgtcgccgtcgttaccgtgatgaacgttatccgacccagtcc
gcgatgcctttagacgccgctgcggcttcgcctgagatggcgtccggcaaagtctggatt
cgctacccggtcgcgcaagcgaatgaagagcaaatcgttcaggatgcgcctcaatcgaca
ccggactacagccgtgaagagactgcacctgctgttgccctgcctgtcgctaccgaggaa
gcgccggcttcacaggctgcgccagtacaaatcgcagagccgcaggctgacgccccggtt
accgtggtgaatactgacgatactcaggccattgaagccccggttcatcatgaaccttcg
gtgattccagccgccgctgaagccagtgctgaagcgatcgcgcaacaggctcagcctgct
gacgctgtcgaagcgccggaggtgaaggtgccggttgtcgcagaatccgcgcctgaagaa
acggcggatgagcatgcgggcactgaagtcagcgctgcgaccgaagcgcaggtggcagag
gttttacacgcgcctgttgccgctgaggaagccattacgccggttagtgaacctcatgca
cctgttgccgcacgcgacatccctgttgaggcattaaaagccaacgccgaaacgcgctgg
aagcactttgcttctgcaccgatgaccaaggcgcctgcgccagtgtggcaacccgagcct
gcccgtcaaagtgactggcaacgtccggcctttaaatttgagggcagaggttctgctggc
ggccacagcgccacccatcaggctactgcacctgccaccaagccgtaa
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