Pantoea ananatis AJ13355: PAJ_3306
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Entry
PAJ_3306 CDS
T01969
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
paj
Pantoea ananatis AJ13355
Pathway
paj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAJ_3306 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paj03021
]
PAJ_3306 (rho)
03019 Messenger RNA biogenesis [BR:
paj03019
]
PAJ_3306 (rho)
Transcription machinery [BR:
paj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PAJ_3306 (rho)
Messenger RNA biogenesis [BR:
paj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PAJ_3306 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
AAA
S1CSD-TOTE-2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
BAK13386
LinkDB
All DBs
Position
3952875..3954134
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVN
YDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTSQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattaccctcggcgagaat
atggggctggaaaatcaggctcgtatgcgcaagcaggacattattttctcaatcctgaag
cagcacgcgaaaagcggcgaggacatcttcggtgatggtgtgctggagatattgcaggat
ggatttggattcctccgctctggagacagctcctacctcgccggtcctgatgacatctac
gtttctcccagccaaattcgccgctttaacctccgcactggtgacaccatcgccggcaaa
atccgtccaccaaaagaaggtgagcgctactttgccctgctgaaagttaacgaagttaac
tacgacaaaccagaaaactcgcgtaacaagattctgttcgaaaacctcacgccgctgcac
gctaacagccgtctgcgtatggagcggggtaatggctcaactgaagacttaaccgctcgc
gtactggacctggcgtcaccgattggtcgtggtcagcgtggtctgattgtggcaccgccg
aaagccggtaaaacgatgctgctgcagaatatcgcgcagagcattgcttacaaccatcca
gactgtgtgctgatggtgctgctaatcgatgagcgtccggaagaagtgacagagatgcaa
cgcctggtaaaaggtgaagtgatcgcgtctaccttcgatgaaccggcttcgcgtcacgtt
caggtggccgagatggtgatcgaaaaggccaagcgcctggtcgagcacaaaaaagacgtc
atcattttactcgactccatcacgcgtctggcccgtgcctacaacaccgtcgttccggct
tccggtaaagtactgaccggtggtgtggacgccaacgccctgcatcgtcctaagcgtttc
ttcggtgcggcacgtaatgtggaagagggcggtagcctgaccatcattgcgacggcactg
gtggataccggttcgaagatggatgaagtgatttacgaagagtttaaaggcaccggtaac
atggagctgcatctctcacgtaagatcgccgaaaaacgtgtcttcccggcgattgactac
aaccgttcaggtacccgtaaagaagagctgttaacctctcaggaagagctgcagaaaatg
tggatcctgcgtaagattatccatccaatgggtgaaatcgacgcgatggaattcctgatt
aacaagttggccatgaccaaaaccaacgacgaattcttcgatatgatgaagcgttcttga
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