Pantoea ananatis AJ13355: PAJ_3611
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Entry
PAJ_3611 CDS
T01969
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paj
Pantoea ananatis AJ13355
Pathway
paj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAJ_3611 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paj03019
]
PAJ_3611 (deaD)
03009 Ribosome biogenesis [BR:
paj03009
]
PAJ_3611 (deaD)
Enzymes [BR:
paj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAJ_3611 (deaD)
Messenger RNA biogenesis [BR:
paj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAJ_3611 (deaD)
Ribosome biogenesis [BR:
paj03009
]
Prokaryotic type
rRNA helicases
PAJ_3611 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAK13690
UniProt:
A0A0H3L9W2
LinkDB
All DBs
Position
4320093..4321985
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AA seq
630 aa
AA seq
DB search
MTDIQTTFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLEQYRALLAKMQPEEELDIETL
AAALLKMAQGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRRERRDVG
DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVLQH
FTRTRILNKPMNMQLLGDAQPHEGGRGERRPGAGAGERRGGGARPEGQGPRRFSSERREG
GREGGRSFNREGGRGPRREDGAAAPRRRDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgcagaacttggcctgaacgccgaactccttgaatca
ctgaacggcatgggctatgtcaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtattaggtatggcgcagaccgggagtggtaaaactgcagcgttc
tcgctgccgctgttacacaacatcgatccaactgttaaagcaccgcaaattttggtgctg
gcaccgacccgcgaactggcggtgcaggtagctgaagctgttaccgaattctctaaacat
atgcgcggtctgaacgtggttgccctttacggcggccagcgttatgacgtgcagctgcgc
gccctgcgccagggaccacaggttgtcgtaggtactccaggccgtctgctggatcacctg
aaacgtggcacgttagatctgtctaacctgcgtggtctggtgctggacgaagccgatgaa
atgttacgcatgggcttcatcgaagacgttgaaactatcatggcgcagatcccagaaggt
catcagaccgcactgttctctgccaccatgccagaagcgattcgtcgtattaccaagcgt
tttatgaaagatccgcaggaagtgcgcattcagtcaagcatgactacgcgcccagacatc
agccagagttactggacggcttacggccgtaaaactgacgcgctggttcgcttccttgaa
gcagaagacttcgatgctgcgatcattttcgtgcgcactaaaaacgcaacgctggaagtg
gctgaagcgctggagcgcagcggttacaacagtgcggcactgaacggcgatatgaaccag
gcactgcgtgagcagacgctggagcgcctgaaagatggtcgtctggatatcctgattgct
accgacgttgcggcccgtggcctggacgttgagcgtatcagcctggttgttaactacgat
attccgatggacgcagaatcttacgttcaccgtatcggccgtaccggtcgtgctggtcgt
gcaggtcgcgcactgctgttcgtagagaaccgcgagcgtcgtctgctgcgtaacatcgaa
cgcaccatgaagctgaccattccagaagttgagctgccaaatgcagaactgctgggtcag
cgtcgtctggctaagttcgcggcaaaagttcagcagcagctggaaagcagcgatctggaa
cagtaccgtgcgctgctggcgaagatgcagcctgaagaagagctggatatcgaaacgctg
gctgctgcgctgctgaaaatggcacagggtgagcgtccgctgatcgttcctgctgatgca
ccacgtccagcgcgtcgtgaattccgtgagcgtgacgatcgtcgtgagagccgtgatgca
cgtggtccacgcgaaagccgtgatggcgaccgcccacgtcgcgaacgtcgtgacgttggc
gatatgcaactgtaccgcattgaagtgggccgtgacgacggtgttgaagtgcgtcacatc
gtgggcgcaattgccaacgaaggcgatatcagcagccgttacatcggtaacatcaaactg
tttggtacgcactccaccatcgagctgccgaaaggcatgccaggtgatgtgctgcagcac
tttacccgtacgcgtattctgaacaagccaatgaatatgcagctgctgggtgatgctcag
ccgcacgaaggtggccgtggcgagcgtcgtcctggcgctggtgctggcgaacgtcgtggc
ggcggtgcacgtcctgaaggtcagggcccgcgtcgtttctcttctgagcgccgtgaaggt
ggtcgtgaaggcggacgcagcttcaaccgcgaaggcggtcgtggtccacgtcgtgaagac
ggtgcggctgcaccacgtcgtcgtgacgcgtaa
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